Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J08
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    29   0.51 
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    25   6.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.3  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   8.3  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = -2

Query: 534 PIKIVRLLCIPAAPANRHLNMSIRVSLSAMMFWNSASTICP--S*YVIGSSKGYSKPWRH 361
           PI +  +   P  PA     ++    LS +   +S +T  P  + +   S  G+S   R 
Sbjct: 206 PITVTAVPDSPNPPAATPATVADNDDLSIVSS-DSGNTTAPRKNRHRYWSFAGFSDSTRF 264

Query: 360 SHLYPPASKP-LPSIGTQ*EVDLSHLSV 280
           SHL  PA+ P  PS+ T+   ++S LSV
Sbjct: 265 SHLNVPAAIPDAPSVKTETSQNVSQLSV 292


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 AFKGTD--KCDRSTSYCVPILGRGFEAGGYKCECLQGFEY 382
           AF G D  K DRS +Y    + +   A G    CL    Y
Sbjct: 268 AFSGKDYSKVDRSAAYAARWIAKSLVAAGLARRCLVQLSY 307


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 107 VRGTLKQWVVTYAAPFFGWDSVKVKLEFKGV 199
           +R      +VTY   FF W  V  +  F G+
Sbjct: 352 IRSAKPSVIVTYNGDFFDWPFVDARAAFHGL 382


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 396 GSSKGYSKPWRHSHLYPP 343
           GS++     W H H YPP
Sbjct: 306 GSNEEVENSWFHMHFYPP 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,533
Number of Sequences: 5004
Number of extensions: 41864
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)