Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J08
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 172 NTVPTEERCRVGDDPLLQGAT 110
           N VP+ +R  V +DPL+   T
Sbjct: 23  NAVPSSQRGNVHNDPLVVETT 43


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 172 NTVPTEERCRVGDDPLLQGAT 110
           N VP+ +R  V +DPL+   T
Sbjct: 23  NAVPSSQRGNVHNDPLVVETT 43


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 276 KAPTSATDPPPIVYR 320
           K   + T PPP+V+R
Sbjct: 331 KCDVTGTPPPPLVWR 345


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 228 STSINARTSITYRTRSKAPTSATDPPPIV 314
           +T+    T+ T    +    SAT PPP V
Sbjct: 665 TTTTTTTTTTTTTPNTTQNASATTPPPQV 693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,958
Number of Sequences: 438
Number of extensions: 3154
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)