Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J06
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 107 2e-24
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 30 0.26
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 30 0.34
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.79
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 28 1.4
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 27 3.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.2
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 26 5.6
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz... 25 7.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.4
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 25 7.4
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 7.4
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 9.7
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 9.7
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.7
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 107 bits (256), Expect = 2e-24
Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 2/179 (1%)
Frame = +1
Query: 121 KRAVKMLSRVAPGVCTQAVAVVN-HQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAA 297
++ + SR+ P C V H + ATLK I RLKS+KNI+KIT+++K V+
Sbjct: 3 RQTLTQASRMRP--CISVVGFRGFHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQT 60
Query: 298 KYTRAERDLKAARPYGEGAVQFYERAEVVALEDDPKQLYVAMTSDRGLCGAVHTGVSKVI 477
K TRA+R ++A+ Y + + ++ A A E+ K L VA +SD+GLCG +H+ +S++I
Sbjct: 61 KLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLI 119
Query: 478 RNRLNEPGA-ENIKVICVGDKSRSILQRLYSKHIISVANEIGRLPPTFLDAAQLATAIL 651
R L++P EN + +G+K R+ L R + IG P+F +A Q+++ IL
Sbjct: 120 RRELHDPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNIL 178
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 163 CTQAVAVVNHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 324
C +AV + +N KAI I K VKNI T ++++ RA + L
Sbjct: 1058 CDEAVERLGADDTKNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 474 HLRDTGVDSTTQSSVRGHSDVE 409
HL +T D +T SSVRG+ V+
Sbjct: 241 HLHNTWEDYSTLSSVRGYKKVD 262
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 29.9 bits (64), Expect = 0.34
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 436 GLCGAVHTGVSKVIRNRLNEPGAENIKVICVGDKSRSILQRLYSKHIISVA 588
G+ GA+ TGV +N L E GA ++ +IC +L +YS ++VA
Sbjct: 92 GIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMVLMTVYSLGELAVA 141
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.79
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 476 SATGSTNPELRISRLSASETSPAASCNVSTANTSS 580
SATGS+ + + +S S TS A+ + + ++TSS
Sbjct: 969 SATGSSTSSIATASVSGSSTSSVATASATDSSTSS 1003
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 476 SATGSTNPELRISRLSASETSPAASCNVSTANTSS 580
SAT S+ + + ++ S TS A+ +V+ ++TSS
Sbjct: 995 SATDSSTSSIAAASVTGSSTSSVATASVTDSSTSS 1029
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 476 SATGSTNPELRISRLSASETSPAASCNVSTANTSS 580
SAT S+ + ++ ++ S TS A+ + + ++TSS
Sbjct: 1034 SATDSSTSSIAVASVTGSSTSSVATASATDSSTSS 1068
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 488 STNPELRISRLSASETSPAASCNVSTANTSS 580
S+NPEL S L A SPA N + N SS
Sbjct: 267 SSNPELSNSNLLAKNESPADVSNNESGNESS 297
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 469 KVIRNR-LNEPGAENIKVICVGDKSRSILQR 558
K++R++ LN G E + ++ VG+KS +QR
Sbjct: 97 KIVRDKILNHTGTEWVPIVVVGNKSDLHMQR 127
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 476 SATGSTNPELRISRLSASETSPAASCNVSTANTSSALLMKSAACRPRSWTRLSSRPQS 649
S++ S++ S S+S +S ++S + S TSS S++ S + SSRP S
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSS 236
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -3
Query: 483 VADHLRDTGVDSTTQSSVRGHSDVELLRVILKGDYLSPFVE 361
+A LRD GVD SS H D R+ +K Y PF E
Sbjct: 282 LAARLRDGGVDLIDVSSGGNHKD---QRIEVKDCYQVPFAE 319
>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
L27|Schizosaccharomyces pombe|chr 1|||Manual
Length = 93
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 222 FKCGHIPVLLVVDHRHRLGAYTRCDTTQHFHGSFLVQW 109
F +P+ + H++ G T + HG FLVQW
Sbjct: 8 FGARRLPMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQW 45
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 452 STPVSRR*SATGSTNPELRISRLSASETSPAASCNVSTANTSS 580
STP+S +++ S++ +S SAS + +S + T + SS
Sbjct: 164 STPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASS 206
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 152 HRVYAPKRWRWSTTSRTGIWPHLKPSPFVSSL*RIF 259
H+VY R W T G +P+LK + V L R+F
Sbjct: 281 HQVYP--RGNWVFTCLNGYYPYLKLTLLVGFLFRLF 314
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 241 KSVKNIQKITQSMKMVSAAKYTRAERDLK 327
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 221 LSVAIFLFCWWLTTATAWVHTP 156
+S++I+ F +WLT +W+ P
Sbjct: 115 VSLSIWRFLYWLTFVLSWIILP 136
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 453 PHRCLEG-DPQPAQRTRS*EYQGYLRRRQVPQHLATSLQ 566
P+ C + + A++TR + Q Y R R++ Q + TSLQ
Sbjct: 230 PYVCFRRREIRQARKTRRSDAQSYDRLRRLRQSMETSLQ 268
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 509 ISRLSASETSPAASCNVSTANTSSA 583
+S + +S TS AAS +S+A +SSA
Sbjct: 260 VSSVVSSATSVAASSTISSATSSSA 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,806
Number of Sequences: 5004
Number of extensions: 54087
Number of successful extensions: 194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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