Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J06
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 63 2e-10
07_03_0571 - 19602755-19603831 63 2e-10
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 30 1.9
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857... 29 2.5
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 29 2.5
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 29 3.3
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 29 4.4
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 29 4.4
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 29 4.4
01_06_0654 + 30911416-30912071,30913664-30914348 29 4.4
05_04_0423 - 21126038-21126556 28 5.8
03_05_0287 + 22759946-22760836 28 5.8
03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363... 28 5.8
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 5.8
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 63.3 bits (147), Expect = 2e-10
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +1
Query: 220 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVVALEDD 399
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F V D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 400 PKQLYVAMTSDRGLCGAVHT---GVSKVIRNRLNEPGAENIKVICVGDKSRSILQRLYSK 570
K + VA+TSD+GLCG +++ VSK + + P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 571 HIISVANEIGRLP 609
+I +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188
>07_03_0571 - 19602755-19603831
Length = 358
Score = 63.3 bits (147), Expect = 2e-10
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Frame = +1
Query: 214 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVVAL 390
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y + +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 391 ED----------DPKQLYVAMTSDRGLCGAVHTGVSKVIRNRLNEPGAENIK--VICVGD 534
ED K V +T +RGLCG+ + V K R+ E ++ V+ VG
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156
Query: 535 KSRSILQR 558
K + R
Sbjct: 157 KGNAYFIR 164
>06_03_0810 -
24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 174 GGGGQPPAEQEYGHT*SHLHSSQVCKEYSED 266
G G + A ++ HT H+HS KEY ED
Sbjct: 246 GTGARSNAYTDFHHTVFHIHSPTKTKEYGED 276
>05_04_0356 -
20584212-20584628,20584798-20584899,20585658-20585705,
20586046-20586186,20586315-20586437,20587166-20587252,
20587630-20587742,20587844-20587943,20588217-20588601,
20588841-20588917,20589501-20589593,20589697-20589774,
20590923-20591246
Length = 695
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 181 PPPLGCIHPVRHDSTFSRLFFSTVEIVNLIYIISNNTN 68
P P G HP +D S F S +E + +Y+ N+++
Sbjct: 103 PGPSGATHPTENDCAQSNRFNSVIEKIERLYMGKNSSD 140
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = -3
Query: 597 DFISNADDVFAVETLQ-----DAAGLVSDADNLDILSSGFVEPVADHLRDTGVDS-TTQS 436
DF+S D + LQ L S+AD I + V + ++DTG S T QS
Sbjct: 472 DFVSKDDKMAFYACLQRNLEETRTKLNSEADKFKIEEEDIIVKVGECMQDTGGRSVTAQS 531
Query: 435 SVRGHSDVELLRVILKG 385
++ SD E R +L G
Sbjct: 532 NLNSFSDDEDTREMLLG 548
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 456 HRCLEGDPQPAQRTRS*EYQGYLRRRQVPQHLATSLQQ 569
H+ ++ PQP Q + ++Q +LRR Q+ A + +Q
Sbjct: 47 HQYVQRQPQPQQTPHNSQHQQWLRRNQIAAEAAGASEQ 84
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +2
Query: 533 TSPAASCNVSTANTSSALLMKSAACRPRSWTRLSSRPQS 649
TS A N S S + + S RP S T LSSRP S
Sbjct: 232 TSTATKENASNGQQSRSSGVSSKNSRPSSSTHLSSRPSS 270
>03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 479 ATGSTNPELRISRLSASETSPAASCNVSTANTSSALLMKSAACRPRSWTRLSSRP 643
++GSTN R ++ + SP+AS + + SSA +C P + SS P
Sbjct: 1196 SSGSTNYIRRPGNMTHGDPSPSASNGIGALSGSSAPYFMYYSCEPGTNHGSSSEP 1250
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = -1
Query: 647 IAVAS*AASRNVGGKRPISLATLMMCLL*RRCKMLRDLSPTQITLIFSAPGSLSRLRITF 468
+A+A+ AA+ P L+ C+L RC R L P + S+ S ITF
Sbjct: 1 MALAAAAAAAAAAVSFPPLLSRPAACVL-LRCGRHRRLPPLLLRAASSSTSSAPDFNITF 59
Query: 467 ETPVWTAPHSP 435
P AP P
Sbjct: 60 AEPTAPAPSKP 70
>01_06_0654 + 30911416-30912071,30913664-30914348
Length = 446
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 488 STNPELRISRLSASETSPAASCNVSTANTSSALLMKSAACRPRSW 622
S +P S ++ SPA S VS AN + L+++ P SW
Sbjct: 266 SGSPVAMASMVTPFVPSPAGSGRVSRANPGAWLILQPTGAGPASW 310
>05_04_0423 - 21126038-21126556
Length = 172
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 132 ENVESCRTGCMHPSGGGGQPPAE 200
E + CRT CM +G QPPA+
Sbjct: 105 EKLHQCRTPCMKVNGRWEQPPAD 127
>03_05_0287 + 22759946-22760836
Length = 296
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 307 RAERDLKAARPYGEGAVQFYERAEVVALEDDPKQLYVAMTSDRGL 441
R+ DLK P+ G + ERA + +++DP ++V D G+
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGV 267
>03_01_0471 +
3629158-3629185,3630027-3630058,3630272-3630344,
3630745-3630969,3631319-3631789,3632286-3633118
Length = 553
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +2
Query: 458 PVSRR*SATGSTNPELRISRLSASETSPAASCNVSTANTSSALLMKSAACRPRSWTRLSS 637
PV +R ++TG +P ASET+P S V + SS+ AA PR +S
Sbjct: 295 PVCKRDASTGIPDPP-------ASETTPLLSSAVRLPSQSSSFRSSVAASPPRP---ISR 344
Query: 638 RPQSLTL 658
RP S ++
Sbjct: 345 RPSSQSI 351
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.3 bits (60), Expect = 5.8
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Frame = +1
Query: 202 RNMATLKAISIRLKSVKNIQKITQSM--KMVSAAKYTRAERDLKAARPYGEGAVQFYERA 375
RN +K I K++ +Q+ Q + K + + R A P A R+
Sbjct: 1819 RNDDLIKKIEESSKTITQLQETLQRLEGKSTNLEAENQVLRQQATATPPST-AKSSASRS 1877
Query: 376 EVVALEDDPKQLYVAMTSDRGLCGAVHTGVSKVIRNRLNEPGAENIKVICVGDKSRSILQ 555
++ + P+ ++ R TG S+ I + N P N K + G+K + +L
Sbjct: 1878 KITRIHRSPENGHILNGDTRQAEIKPSTGTSETIPSIGNPPDLNNEKHVEQGEKLQKVLN 1937
Query: 556 RLY 564
+ Y
Sbjct: 1938 QKY 1940
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,783,692
Number of Sequences: 37544
Number of extensions: 414640
Number of successful extensions: 1424
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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