Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J06
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    25   0.85 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    25   0.85 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.0  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 551 CNVSTANTSSALLMKSAACRPRSWTRLSSRPQS 649
           CN    +T++ ++      RP+ W RLS++  S
Sbjct: 75  CNEKQKHTANKVVNYLKTKRPKDWERLSAKYDS 107


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 551 CNVSTANTSSALLMKSAACRPRSWTRLSSRPQS 649
           CN    +T++ ++      RP+ W RLS++  S
Sbjct: 75  CNEKQKHTANKVVNYLKTKRPKDWERLSAKYDS 107


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 462 CLEGDPQPAQRTRS*EYQGYLRRRQVPQHLATS 560
           C+   P P Q   S +  G  RRR+ P++ + S
Sbjct: 389 CVACSPPPRQTPPSRKESGRRRRRRTPRYNSVS 421


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 476 SATGSTNPELRISRLSASETSPAASCNVSTANTSSALLMKSAACRP 613
           S+TGS+ P+L +S  +A  + P  +  VS  +  S   + SA   P
Sbjct: 361 SSTGSSIPKLNLS--TALMSQPPPNFGVSQVSPVSMSALVSAVRSP 404


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 507 EYQGYLRRRQVPQHLATSLQQ 569
           E++ YLR R   QH+    QQ
Sbjct: 8   EFRRYLRNRNQLQHVLEETQQ 28


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 144 SCRTGCMHPSGGGGQPPAEQEYGHT*SHLH 233
           +C +  ++PS  G  PP+   + H  S  H
Sbjct: 298 ACHSPGVYPSTAGFLPPSYHPHQHHPSQYH 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,114
Number of Sequences: 438
Number of extensions: 4002
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)