Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J05
(549 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 227 1e-58
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 126 3e-28
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 98 1e-19
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 95 1e-18
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 95 1e-18
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 89 8e-17
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 89 8e-17
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 88 1e-16
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 87 3e-16
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 85 1e-15
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 84 2e-15
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 82 7e-15
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 78 1e-13
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 76 5e-13
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 74 2e-12
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 73 3e-12
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 73 6e-12
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 71 2e-11
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 68 1e-10
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 65 1e-09
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 62 1e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 57 2e-07
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 52 1e-05
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 50 5e-05
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 1e-04
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 47 3e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 4e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 8e-04
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.001
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.001
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 44 0.002
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 44 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.004
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.007
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.007
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 42 0.009
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.012
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.012
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.016
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.022
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.029
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.029
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.038
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.038
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.038
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.038
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.038
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 40 0.050
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.088
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 38 0.12
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 38 0.15
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.15
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.15
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 38 0.15
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.15
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 38 0.20
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.20
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.27
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.27
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 36 0.47
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.47
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.47
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.47
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.47
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.62
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 0.62
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.82
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.4
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.4
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 34 1.9
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 1.9
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 34 1.9
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 2.5
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 33 3.3
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 33 3.3
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 33 3.3
UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus ory... 33 3.3
UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep: CG... 33 4.4
UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2; Asp... 33 4.4
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 4.4
UniRef50_Q1E4I6 Cluster: Putative uncharacterized protein; n=1; ... 33 5.8
UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like p... 32 7.6
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 7.6
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 227 bits (556), Expect = 1e-58
Identities = 109/134 (81%), Positives = 119/134 (88%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGLRNKREVWRVK+TLA+IRKAARELLTL+EKDP+RL EGNA DE +MK
Sbjct: 34 EYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMK 93
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQVVNIPSFIVRLDS
Sbjct: 94 LDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDS 153
Query: 508 GKHIDFSLKSPFGG 549
KHIDFSL+SP+GG
Sbjct: 154 QKHIDFSLRSPYGG 167
Score = 52.0 bits (119), Expect = 9e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +3
Query: 69 VFSKTYVTPRRPFEKARLDQELKIIGE 149
V KTYVTPRRPFEK+RLDQELK+IGE
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGE 34
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 126 bits (304), Expect = 3e-28
Identities = 63/131 (48%), Positives = 88/131 (67%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
++GL+NK+E+ RV Y L +R A+ +L + KDPKRL+EG A Q K
Sbjct: 33 QFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNK 92
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
L++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQVV++PSF+VR++S
Sbjct: 93 LEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVES 152
Query: 508 GKHIDFSLKSP 540
I + +P
Sbjct: 153 EPLIQLADNTP 163
Score = 34.3 bits (75), Expect = 1.9
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 75 SKTYVTPRRPFEKARLDQELKIIGE 149
S TY TP+ P+E+ R D ELK++G+
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQ 33
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 97.9 bits (233), Expect = 1e-19
Identities = 61/125 (48%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Frame = +1
Query: 172 EVWRVKYTLARIRKAARELLTL-EEKDPKRLVEGNAXXXXXXXXXXXDEKQMK------L 330
EVWRVK+TL +IRKA ELL L EKDP+ L E N E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 331 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 510
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSR 159
Query: 511 KHIDF 525
KH DF
Sbjct: 160 KHTDF 164
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 95.1 bits (226), Expect = 1e-18
Identities = 49/129 (37%), Positives = 76/129 (58%)
Frame = +1
Query: 151 YGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMKL 330
+GL+NKRE+WR ++ L+++RK A +L+ + K K + + L
Sbjct: 36 FGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLEKIPSQSYGILWFCYKYNFMNNMTFCL 95
Query: 331 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 510
+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 96 ESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNE 155
Query: 511 KHIDFSLKS 537
I FSL S
Sbjct: 156 IFISFSLNS 164
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 95.1 bits (226), Expect = 1e-18
Identities = 52/102 (50%), Positives = 64/102 (62%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGLR+K E+WRV+ ELLTL+EK+P+R+ EG A E Q K
Sbjct: 35 EYGLRSKCELWRVQ-----------ELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNK 83
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 453
LDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 84 LDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
Score = 37.1 bits (82), Expect = 0.27
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 72 FSKTYVTPRRPFEKARLDQELKIIGE 149
+ KT+ PRRP+EK R D ELK+ GE
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGE 35
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 88.6 bits (210), Expect = 8e-17
Identities = 49/131 (37%), Positives = 82/131 (62%)
Frame = -1
Query: 543 ERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSDQDAGMMD*LRKTSLEHLSLKTALQ 364
E R EVNVL Q+D ER +V LL ++N+ L DQD+ +++ L +T L L L+++ Q
Sbjct: 28 EWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQ 87
Query: 363 EVLNLQTEHIIQFHLFLIKHSDPNQTT**SIAFNQSLRILLLECQQFTGSLTDASERVLD 184
E+ NLQ++ IIQ L + ++ +Q++ SI F QSL +L + QQ +G +D + +
Sbjct: 88 EIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLERN 147
Query: 183 APHFTLVAETI 151
+ +F+LV +T+
Sbjct: 148 SVNFSLVLQTV 158
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 88.6 bits (210), Expect = 8e-17
Identities = 51/132 (38%), Positives = 72/132 (54%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
KYGLR KREVW+ + L + R+ AR L++ ++ + E +
Sbjct: 33 KYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPT 90
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +VV PS++V ++
Sbjct: 91 LDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEE 150
Query: 508 GKHIDFSLKSPF 543
I ++ SPF
Sbjct: 151 EDKISYAKNSPF 162
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 88.2 bits (209), Expect = 1e-16
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Frame = +1
Query: 151 YGLRNKREVWRVKYTLARIRKAARELLTLEEKDP-----KRLVEGNAXXXXXXXXXXXDE 315
YGL+NK E+W ++ A+ ++ AR LLT + + L+ D+
Sbjct: 32 YGLKNKHELWVMEKIFAKDKERARILLTSTNPEDIPINGRSLLRRLMKYGILGGIDLCDK 91
Query: 316 KQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
+++ L+ VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I ++ Q+V++P F
Sbjct: 92 QEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGF 151
Query: 490 IVRLDSGKHIDFSLKSPFG 546
+VR D I+++ S +G
Sbjct: 152 MVRADKEPLIEYNPYSRYG 170
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 87.0 bits (206), Expect = 3e-16
Identities = 52/132 (39%), Positives = 69/132 (52%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
KYGLRNKRE+W + + + R AR LL L + R ++
Sbjct: 32 KYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNAT 89
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI + + V P +IV
Sbjct: 90 LDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGE 149
Query: 508 GKHIDFSLKSPF 543
IDF SPF
Sbjct: 150 EDLIDFYPTSPF 161
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 84.6 bits (200), Expect = 1e-15
Identities = 49/133 (36%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEE--KDPKRLVEGNAXXXXXXXXXXXDEKQ 321
+YGLRNKREVW K L + RKAARE++ L+ + R+ +
Sbjct: 32 EYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSEN 91
Query: 322 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 501
+D VL LK+E L+RRLQTQV++ G A+S AR I HI + + V IP + V
Sbjct: 92 ADIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSA 151
Query: 502 DSGKHIDFSLKSP 540
+ I ++ SP
Sbjct: 152 KEQEEISYAGSSP 164
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 84.2 bits (199), Expect = 2e-15
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLV--EGNAXXXXXXXXXXXDEKQ 321
+YGLRNKREVW+ + L + RKAARELL L + V +
Sbjct: 32 EYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPD 91
Query: 322 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 501
+D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V +P ++V
Sbjct: 92 ADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTR 151
Query: 502 DSGKHIDFSLKSPF 543
I ++ KSPF
Sbjct: 152 GEETTISYAGKSPF 165
Score = 35.1 bits (77), Expect = 1.1
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 63 PSVFSKTYVTPRRPFEKARLDQELKIIGE 149
P K+Y TP+RPFEK R+++E +++ E
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIE 32
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 82.2 bits (194), Expect = 7e-15
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLVEGNAXXXXXXXXXXXDEKQ 321
+YGLRNK+E+W + L I + AR LL T EE+ P + ++
Sbjct: 34 EYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPN 89
Query: 322 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V + V P F+V
Sbjct: 90 VQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 78.2 bits (184), Expect = 1e-13
Identities = 46/132 (34%), Positives = 72/132 (54%)
Frame = +1
Query: 145 EKYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQM 324
++YGL+NKRE+W + T+AR +A L ++ + + E +
Sbjct: 28 KEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA 86
Query: 325 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 504
+LD VL L ++D LERRLQT + + GLAK++ AR I HI V +VV+ PS++V+ +
Sbjct: 87 ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKE 146
Query: 505 SGKHIDFSLKSP 540
I+F SP
Sbjct: 147 EEDKIEFVPFSP 158
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 76.2 bits (179), Expect = 5e-13
Identities = 46/131 (35%), Positives = 67/131 (51%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
KYGL NK+E+W+++ L R+ AR+L++ ++ E ++
Sbjct: 32 KYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDAT 89
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LD VL L +E LERRLQT VF+ GLA + AR I HI V + +N PS++V L
Sbjct: 90 LDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVE 149
Query: 508 GKHIDFSLKSP 540
I + SP
Sbjct: 150 EDAISYMPNSP 160
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 74.1 bits (174), Expect = 2e-12
Identities = 41/126 (32%), Positives = 64/126 (50%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
KYGL+NK+E+W+ + + R R+ AR +L + D + K
Sbjct: 32 KYGLKNKKEIWKAESRVKRYRRDARIILGM---DIDERADKEKELLDHLVRAGFISPNAK 88
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
L+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + + +N P +V
Sbjct: 89 LEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKAD 148
Query: 508 GKHIDF 525
++IDF
Sbjct: 149 EENIDF 154
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 73.3 bits (172), Expect = 3e-12
Identities = 50/132 (37%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLT-LEEKDPKRLVEGNAXXXXXXXXXXXDEKQM 324
KYGL+NKRE+WR + L+ IR AR L L D + +K
Sbjct: 32 KYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQKQLERMIKRLSRYKILSDKAT 91
Query: 325 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 504
LD VL L +E+ L+RRLQT VFK LA S AR LI HI V + V +P +V
Sbjct: 92 -LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQ 150
Query: 505 SGKHIDFSLKSP 540
I + SP
Sbjct: 151 YEDTIAYYENSP 162
Score = 33.9 bits (74), Expect = 2.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 63 PSVFSKTYVTPRRPFEKARLDQELKII 143
P K Y TPR P+EK R+D+E KI+
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKIL 30
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 72.5 bits (170), Expect = 6e-12
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Frame = +1
Query: 151 YGLRNKREVWRVKYTLARIRKAARELLT-LEEKDPKRLVEGN-----AXXXXXXXXXXXD 312
YGLRNK+EVW+ L R AR+LL + + +EG+
Sbjct: 33 YGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSKLIRYGII 92
Query: 313 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 492
+ +D +L LK E+ LERRLQTQV + GLA+++ AR I HI + + IP +
Sbjct: 93 KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGML 152
Query: 493 VRLDSGKHIDFSLKSP 540
V + HI + SP
Sbjct: 153 VSKEDEMHIGYYGSSP 168
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 70.9 bits (166), Expect = 2e-11
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Frame = +1
Query: 145 EKYGLRNKREVWRVKYTLARIRKAARELLTLEEK----DPKRLVEGNAXXXXXXXXXXXD 312
+KYGLRNK+ VW+ L + R AR LL + + +
Sbjct: 31 KKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGIL 90
Query: 313 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 492
++ KL+ VL LK++D +ERRLQT +++ G A SI AR I HI + + + +P ++
Sbjct: 91 KEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYL 150
Query: 493 VRLDSGKHIDFSLKSP 540
V + + + SP
Sbjct: 151 VLKSEEDMLSYYVGSP 166
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 68.1 bits (159), Expect = 1e-10
Identities = 43/126 (34%), Positives = 62/126 (49%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGL+NK E+WR + L R+ AR LL V G E++ +
Sbjct: 32 RYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-R 85
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V V PS+ V +
Sbjct: 86 LDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSE 145
Query: 508 GKHIDF 525
+ F
Sbjct: 146 ENTLAF 151
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 64.9 bits (151), Expect = 1e-09
Identities = 44/131 (33%), Positives = 63/131 (48%)
Frame = +1
Query: 151 YGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMKL 330
+GLR KRE+W+ L+R+R AR LL L ++ +R K L
Sbjct: 33 FGLRTKRELWKAHTELSRVRNQARSLLALGQEVRERK---EPVLLRSLARIGLVGKDASL 89
Query: 331 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 510
D VL L++ D L RRLQT V K + + AR + HI + +VV IPS+ V ++
Sbjct: 90 DDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEE 149
Query: 511 KHIDFSLKSPF 543
I + S F
Sbjct: 150 GDIKLTGGSAF 160
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 61.7 bits (143), Expect = 1e-08
Identities = 41/116 (35%), Positives = 59/116 (50%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGL N E+W+V+ ++R+R R LL+ + + E
Sbjct: 32 EYGLANMHELWKVQSEISRLRGNVRVLLSGSSSH-----DTSDKIIARMVKFGILENGAT 86
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
L+ VL + FLERRLQT VFK GLA++I AR LI I V + V+IP ++V
Sbjct: 87 LEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYMV 142
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 57.2 bits (132), Expect = 2e-07
Identities = 25/29 (86%), Positives = 29/29 (100%)
Frame = +1
Query: 175 VWRVKYTLARIRKAARELLTLEEKDPKRL 261
VWRVK+TLA+IRKAARELLTL+EKDP+RL
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRL 29
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 310 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 417
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 51.6 bits (118), Expect = 1e-05
Identities = 28/54 (51%), Positives = 31/54 (57%)
Frame = -2
Query: 548 PPNGDFREKSMCLPESRRTMNEGMFTTCLRTRICLCLIKMRA*WIDFARPALNT 387
PP+G+ KSMC S RT G FT CL TRI IK RA D ARP+L T
Sbjct: 56 PPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 49.6 bits (113), Expect = 5e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 457 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 549
V +Q+VNIPSFIVRL+S KHI FSL SP GG
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGG 57
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 522
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 523 FSLKS 537
+S
Sbjct: 143 IKPES 147
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 47.2 bits (107), Expect = 3e-04
Identities = 32/116 (27%), Positives = 49/116 (42%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
KYGLR++ E + + ++RK A L L+E DP R K K
Sbjct: 34 KYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KNRK 91
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
L + + F ERRL + + + S A + H+R+ +VV PS I+
Sbjct: 92 LVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +1
Query: 340 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 498
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 47.2 bits (107), Expect = 3e-04
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = +1
Query: 310 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
+E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI SF
Sbjct: 69 EEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASF 127
Query: 490 IVRL 501
V++
Sbjct: 128 RVKV 131
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 4e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 337 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 8e-04
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 316 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 496 R 498
+
Sbjct: 152 K 152
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.001
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +1
Query: 316 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 496 R 498
+
Sbjct: 113 K 113
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +1
Query: 337 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 516
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 517 IDFSLKS 537
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.4 bits (100), Expect = 0.002
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 337 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ V
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSYQV 140
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 44.4 bits (100), Expect = 0.002
Identities = 31/116 (26%), Positives = 50/116 (43%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+Y L+ + + R +R+ AR L L E+D R V +A +
Sbjct: 36 RYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFR-VRASAALLDKLYALGLVPTRGS 94
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
L+ + F RRL T + K +A+ + A + Q H+RV VV P+F+V
Sbjct: 95 LELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.004
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 522
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 523 FSLKS 537
KS
Sbjct: 147 IKEKS 151
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.007
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 537
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.007
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +1
Query: 313 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 41.9 bits (94), Expect = 0.009
Identities = 30/116 (25%), Positives = 48/116 (41%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
KYG+ ++RE+ + T+ +IR L L + + R+ D Q
Sbjct: 34 KYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQAS 93
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
LD + L L RRL + K + + I ++Q H+RV VV P+ V
Sbjct: 94 LDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPALHV 149
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.5 bits (93), Expect = 0.012
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +1
Query: 313 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 492
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 493 VR 498
VR
Sbjct: 137 VR 138
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.012
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.016
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +1
Query: 313 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 492
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 493 VRL 501
VR+
Sbjct: 135 VRV 137
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.022
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 522
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 523 FSLKS 537
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.029
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 337 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 498
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 40.3 bits (90), Expect = 0.029
Identities = 31/97 (31%), Positives = 43/97 (44%)
Frame = +1
Query: 199 ARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRL 378
A +K + + LEEK RL G + K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSERQMLRYM----RKARRSKGSTGLALLQMLEMRL 94
Query: 379 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.038
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 316 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 496 R 498
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.038
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.038
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 325 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 492
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.038
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 358 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 501
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.038
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 522
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 523 F 525
F
Sbjct: 147 F 147
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 39.5 bits (88), Expect = 0.050
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
LE RL +F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.088
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 38.3 bits (85), Expect = 0.12
Identities = 26/115 (22%), Positives = 46/115 (40%)
Frame = +1
Query: 151 YGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMKL 330
Y ++N+ + + IR+ A +L L DP R K
Sbjct: 36 YHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKIS 95
Query: 331 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
D + + RRL + + +A++I A I Q H+RV ++N P+++V
Sbjct: 96 DLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLV 150
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 37.9 bits (84), Expect = 0.15
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Frame = +1
Query: 166 KREVWRVKYTLA-RIRKAARELLTLEEKDPKR--LVEGNAXXXXXXXXXXXDEKQMKLDY 336
KRE + + TLA + R+ A + L E DP R E + ++
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99
Query: 337 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 516
V G F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDM 156
Query: 517 IDFSLKS 537
I ++ S
Sbjct: 157 ITWTKAS 163
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.15
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 498
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.15
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 313 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 492
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 493 V 495
V
Sbjct: 136 V 136
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 37.9 bits (84), Expect = 0.15
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +1
Query: 313 EKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 477
E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +V
Sbjct: 61 ENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSILVK 120
Query: 478 IPSFIV 495
PSFI+
Sbjct: 121 KPSFIL 126
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.15
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 37.5 bits (83), Expect = 0.20
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 166 KREVWRVKYTLAR-IRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMKLDYVL 342
KRE + L+R IR+ ++ ++ K P R E + + L+
Sbjct: 40 KREDYTTYNKLSRNIRELTNKIAEVDAKHPFR-TEMSGLLLEKLYVLGLIPTKWDLENAS 98
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
+ F RRL + + +++++ HA +I H+RV VV P+F+V
Sbjct: 99 KISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPAFLV 149
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.20
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 325 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 504
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 505 S 507
S
Sbjct: 142 S 142
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.27
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 498
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.27
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 337 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 498
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 36.3 bits (80), Expect = 0.47
Identities = 11/46 (23%), Positives = 30/46 (65%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 501
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ +
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV 189
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 36.3 bits (80), Expect = 0.47
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 361 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 528
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.47
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 498
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.47
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.47
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.62
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.9 bits (79), Expect = 0.62
Identities = 31/98 (31%), Positives = 44/98 (44%)
Frame = +1
Query: 208 RKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQ 387
RK + L LEEK R G +K ++V L + LE+RL
Sbjct: 44 RKYSEFALQLEEKQKLRFHYG-LREEQFRRLINKAKKSKATNWVEALV--NLLEKRLDNV 100
Query: 388 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 501
VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 101 VFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 0.82
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.4
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 343 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 489
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 346 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 525
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 526 S 528
+
Sbjct: 135 A 135
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 34.3 bits (75), Expect = 1.9
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +1
Query: 184 VKYT-LAR-IRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIE 357
+KY L+R +R A ++ L+ KDP R + KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 358 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
F RRL + K +A+++ A ++ HIRV ++V P+F+V
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVLDPAFLV 105
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 1.9
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 525
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 34.3 bits (75), Expect = 1.9
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 537
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 2.5
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 352 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 513
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 33.5 bits (73), Expect = 3.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 358 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 105 DFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 33.5 bits (73), Expect = 3.3
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 481 PSFIVRLDSGKHIDFSLKSPFGG 549
PSF+VR+DS K D SL SP GG
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGG 46
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 33.5 bits (73), Expect = 3.3
Identities = 23/116 (19%), Positives = 48/116 (41%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
++GL+ K E +A+ + +E+ L ++DP + + D KQ
Sbjct: 36 RFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGVIDLKQP- 94
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
++ + F RR + K A+ + A L+ H+R+ + + P+ I+
Sbjct: 95 -SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPALII 149
>UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 950
Score = 33.5 bits (73), Expect = 3.3
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Frame = -3
Query: 484 KECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHNPVSSVSHQA 305
++ + PA E GHD + + + P D +P S +H P S+ H
Sbjct: 564 EQVNTPAPQPEQPKDHEESGHDNQSHEIESPKPTGADSSPHEDPSREDSHGPSSTPVHGQ 623
Query: 304 LRP*PDDVVEHCLQPIS*DPS--PRVSTVHGQP 212
P D + + + S + S P + VHGQP
Sbjct: 624 PEPTGVDGIHNQEESSSHEDSHGPSSTPVHGQP 656
>UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep:
CG33196-PB - Drosophila melanogaster (Fruit fly)
Length = 23015
Score = 33.1 bits (72), Expect = 4.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 357 GLLGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSC 458
GL G P+S G G+ C+V+ CP+ Y C
Sbjct: 9018 GLSGDPTSVIGCHGYECQVDADCPNSKACMGYRC 9051
>UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2;
Aspergillus fumigatus|Rep: Zinc finger protein, putative
- Aspergillus fumigatus (Sartorya fumigata)
Length = 1650
Score = 33.1 bits (72), Expect = 4.4
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -1
Query: 546 AERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSD 436
AER E +VLA V + R +V ++L+ TN+PL D
Sbjct: 521 AERLFALEASVLASVADSEARASVSNILSKTNLPLLD 557
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 4.4
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 364 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_Q1E4I6 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 690
Score = 32.7 bits (71), Expect = 5.8
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 400 QP*TPESEDGAPRSPQSSNRAHNPVSSVSHQAL-RP*PDDVVEHCLQP 260
+P + G R+P +S+ HNP+SS+S + L + P + HCL P
Sbjct: 454 EPVSTSPSPGVLRAPHNSDSVHNPLSSLSPETLAKVKPILLTLHCLFP 501
>UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like
protein; n=5; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to EGF-like protein -
Strongylocentrotus purpuratus
Length = 1686
Score = 32.3 bits (70), Expect = 7.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 378 SDSGVQGWSCEVNPSCPHLDQTEAYSCPQAGGE 476
SDSG C+V S P DQ +YS P GG+
Sbjct: 968 SDSGQASCLCDVGFSGPTCDQVSSYSIPMFGGD 1000
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 7.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 370 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,113,047
Number of Sequences: 1657284
Number of extensions: 10987417
Number of successful extensions: 31686
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 30594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31652
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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