Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J05
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 207 9e-55
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 206 1e-54
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 42 6e-05
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 28 0.79
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.4
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 26 3.2
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.2
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 25 7.3
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 7.3
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 9.7
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 9.7
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 207 bits (505), Expect = 9e-55
Identities = 97/134 (72%), Positives = 112/134 (83%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGLRNK E+WRV TL++IR+AARELLTL+EKDPKRL EGNA DE +MK
Sbjct: 33 EYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMK 92
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+
Sbjct: 93 LDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDA 152
Query: 508 GKHIDFSLKSPFGG 549
KHIDF+L SP+GG
Sbjct: 153 QKHIDFALSSPYGG 166
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = +3
Query: 63 PSVFSKTYVTPRRPFEKARLDQELKIIGE 149
P SKTY PRRPFE ARLD ELK+ GE
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGE 33
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 206 bits (504), Expect = 1e-54
Identities = 97/134 (72%), Positives = 112/134 (83%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGLRNK E+WRV TL++IR+AARELLTL+EKDPKRL EGNA DE +MK
Sbjct: 33 EYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMK 92
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+
Sbjct: 93 LDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDT 152
Query: 508 GKHIDFSLKSPFGG 549
KHIDF+L SP+GG
Sbjct: 153 QKHIDFALSSPYGG 166
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = +3
Query: 63 PSVFSKTYVTPRRPFEKARLDQELKIIGE 149
P SKTY PRRPFE ARLD ELK+ GE
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGE 33
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 41.9 bits (94), Expect = 6e-05
Identities = 27/116 (23%), Positives = 45/116 (38%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+Y + + E + + R+ A L L+ DP RL N K
Sbjct: 35 RYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKM 94
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
D + RRL + K +++ + A LI Q H+RV V+ P+++V
Sbjct: 95 SDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 28.3 bits (60), Expect = 0.79
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -1
Query: 276 SIAFNQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 148
SI F S RIL Q T LT S + HF ++ TIL
Sbjct: 18 SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 322 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 453
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 3.2
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -1
Query: 378 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFNQSLRILLLECQQFTGSLTDA 202
KT++ E+ N H+ +F ++K + Q +QSL E FT SL
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246
Query: 201 SERVLDAPHFTLVAETIL 148
+E V+D T +++ +L
Sbjct: 247 NEVVIDRGPNTAMSDIML 264
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 376 DGAPRSPQSSNRAHNPVSSVSHQALRP 296
DGA S Q+ AHNP +SVS + +RP
Sbjct: 90 DGA--SSQNDAFAHNPSTSVSVELVRP 114
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 12 IRHED*DELAKMVNNRVPSVFSK-TYVTPRRPFEKARLDQELKIIG 146
IR D DEL++ ++ PS+ S+ ++ +P R + + + K+ G
Sbjct: 76 IRRSDFDELSEYTASKSPSIISEASHNSPSRELDDSGDENTSKLTG 121
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 384 SGVQGWSCEVNPSCP 428
+G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 411 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLS 530
V+ + P +++ + P GG HS + RP R + LLS
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLS 151
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 125 SGVEDHRRSMVSATSVKCGASSTRSLASVRLPVNC*HSRRRILRDWLKAMLYYVVWL 295
S E HR +V AT+V A ++ ++ ++R V+C ++ R+ + + V W+
Sbjct: 722 SSPEGHRMCIV-ATNV---AETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWI 774
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,113
Number of Sequences: 5004
Number of extensions: 43839
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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