Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J05
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 184 4e-47
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 184 4e-47
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 184 4e-47
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 95 3e-20
07_03_1357 - 25982861-25983068,25983354-25983361 52 4e-07
07_03_1358 - 25984897-25984997,25985623-25985650 42 4e-04
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.26
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.2
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 28 4.3
02_05_1008 - 33461225-33462334 27 7.5
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 184 bits (448), Expect = 4e-47
Identities = 88/134 (65%), Positives = 106/134 (79%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+ EG A + Q K
Sbjct: 35 EYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNK 94
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 95 LDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVES 154
Query: 508 GKHIDFSLKSPFGG 549
KHIDFSL SPFGG
Sbjct: 155 EKHIDFSLTSPFGG 168
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 72 FSKTYVTPRRPFEKARLDQELKIIGE 149
+ KT+ PRRP+EK RLD ELK++GE
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGE 35
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 184 bits (448), Expect = 4e-47
Identities = 88/134 (65%), Positives = 106/134 (79%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+ EG A + Q K
Sbjct: 58 EYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNK 117
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 118 LDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVES 177
Query: 508 GKHIDFSLKSPFGG 549
KHIDFSL SPFGG
Sbjct: 178 EKHIDFSLTSPFGG 191
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 78 KTYVTPRRPFEKARLDQELKIIGE 149
KT+ PRRP+EK RLD ELK++GE
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGE 58
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 184 bits (448), Expect = 4e-47
Identities = 88/134 (65%), Positives = 106/134 (79%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+ EG A + Q K
Sbjct: 251 EYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNK 310
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 507
LDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S
Sbjct: 311 LDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVES 370
Query: 508 GKHIDFSLKSPFGG 549
KHIDFSL SPFGG
Sbjct: 371 EKHIDFSLTSPFGG 384
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 72 FSKTYVTPRRPFEKARLDQELKIIGE 149
+ KT+ PRRP+EK RLD ELK++GE
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGE 251
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 95.1 bits (226), Expect = 3e-20
Identities = 52/102 (50%), Positives = 64/102 (62%)
Frame = +1
Query: 148 KYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMK 327
+YGLR+K E+WRV+ ELLTL+EK+P+R+ EG A E Q K
Sbjct: 35 EYGLRSKCELWRVQ-----------ELLTLDEKNPRRIFEGEALLRHMNRYGLLGEGQNK 83
Query: 328 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 453
LDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 84 LDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 72 FSKTYVTPRRPFEKARLDQELKIIGE 149
+ KT+ PRRP+EK R D ELK+ GE
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGE 35
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = +1
Query: 454 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 549
RV +Q+VNIPSFIVRL+S KHI FSL SP GG
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGG 34
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 72 FSKTYVTPRRPFEKARLDQELKIIGE 149
+ KT+ PRRP+EK RLD ELK++GE
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGE 35
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 370 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 495
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 352 IEDFLERRLQTQVFKAGLAKSIHHAR 429
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 384 SGVQGWSCEVNPSCPHLDQTEAY 452
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +1
Query: 313 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 492
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 493 VRLDSGKHI 519
+ +DSG+ +
Sbjct: 217 L-IDSGRRV 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,489
Number of Sequences: 37544
Number of extensions: 318809
Number of successful extensions: 903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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