Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J05
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 220 5e-58
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 39 0.002
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 30 1.3
U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein. 29 1.7
U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated p... 29 1.7
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 29 2.2
U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical pr... 29 2.2
U64847-11|AAB04878.2| 151|Caenorhabditis elegans Hypothetical p... 28 5.1
Z35639-4|CAA84696.1| 220|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 27 6.7
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 6.7
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 6.7
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 27 8.9
AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rna... 27 8.9
AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical ... 27 8.9
AC024761-8|AAF59469.2| 335|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 220 bits (538), Expect = 5e-58
Identities = 104/133 (78%), Positives = 117/133 (87%)
Frame = +1
Query: 151 YGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLVEGNAXXXXXXXXXXXDEKQMKL 330
+GL+NKREVWRVKYTLA++RKAARELLTLE+KDPKRL EGNA DE +MKL
Sbjct: 34 FGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKL 93
Query: 331 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 510
DYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+QVV++PSFIVRLDS
Sbjct: 94 DYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQ 153
Query: 511 KHIDFSLKSPFGG 549
KHIDFSL+SP+GG
Sbjct: 154 KHIDFSLQSPYGG 166
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 57 RVPSVFSKTYVTPRRPFEKARLDQELKIIG 146
R+ +V SK +PRRPFEK RLDQELK+IG
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIG 32
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 39.1 bits (87), Expect = 0.002
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Frame = +1
Query: 166 KREVWRVKYTLA-RIRKAARELLTLEEKDPKR--LVEGNAXXXXXXXXXXXDEKQMKLDY 336
KRE + + TLA + R+ A + L E DP R E + ++
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99
Query: 337 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 516
V G F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDM 156
Query: 517 IDFSLKS 537
I ++ S
Sbjct: 157 ITWTKAS 163
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 402 SCEVNPSCPHLDQTEAYSCPQAGGEHS 482
+CE+N CP D ++CP GG H+
Sbjct: 363 ACELN--CPKCDPKHTFTCPAVGGIHN 387
>U76402-1|AAB39734.1| 777|Caenorhabditis elegans degenerin protein.
Length = 777
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 247 PSPRVSTVHGQPYGCERACT*RATLHAC-CGDHTSPM 140
P P + H P GC R C L C CGD P+
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGDPRFPL 576
>U40798-3|AAA81473.2| 777|Caenorhabditis elegans Uncoordinated
protein 8 protein.
Length = 777
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -3
Query: 247 PSPRVSTVHGQPYGCERACT*RATLHAC-CGDHTSPM 140
P P + H P GC R C L C CGD P+
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGDPRFPL 576
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 505 SPGGR*TKECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHN 332
SPGG ++ +P G + S R G DG Q Q + + D + SS R H+
Sbjct: 434 SPGGSAGRQAAP---GDDVGSSEDRSGQDGRRVQQQNASTPASDNSSSHDDSSERRHS 488
>U00036-5|AAT92064.1| 446|Caenorhabditis elegans Hypothetical
protein R151.2d protein.
Length = 446
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 225 FTGSLTDASERVLDAPHFTLVAETILLR*SSTPDQD 118
F G T +E + + P T +T+ L+ S TP+QD
Sbjct: 40 FVGRSTRPTESLTEPPVATQTTQTVFLKPSDTPNQD 75
>U64847-11|AAB04878.2| 151|Caenorhabditis elegans Hypothetical
protein F08F3.1 protein.
Length = 151
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 60 VPSVFSKTYVTPRRPFEKARLDQELKIIGEV 152
VP ++T VTP RP EK + ++++I +V
Sbjct: 74 VPVFHNETTVTPERPIEKKKRVRQIQICHDV 104
>Z35639-4|CAA84696.1| 220|Caenorhabditis elegans Hypothetical
protein D2045.8 protein.
Length = 220
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = -1
Query: 186 DAPHFTLVAETILLR*SSTPDQDAPSRTDVEELRMFWKIPMVPCCSPSWRARLNP 22
D+ HF L+ + + PD D R + E F P++ C LNP
Sbjct: 53 DSKHFRLILNFLRDGQIALPDSDREVREVLAEASYFLLDPLIELCGERLEQSLNP 107
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 363 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 461
+GA S G++C N CP T + CP
Sbjct: 937 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 969
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 363 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 461
+GA S G++C N CP T + CP
Sbjct: 279 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 311
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 363 LGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCP 461
+GA S G++C N CP T + CP
Sbjct: 279 VGACMSGRCASGYTCSNNVCCPQTTTTNPFVCP 311
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +1
Query: 349 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 474
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = +1
Query: 349 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 474
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 391 TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVE-HCLQPIS*DPSPRVSTVHGQ 215
T + GAP + N P ++ + A P V + L +S + + + ++
Sbjct: 749 TTAASSGAPVNSNIQNHRATPSTAGAPMAATPIMTAVTSANELAALSPERAQALLNMYRM 808
Query: 214 PYGCERACT 188
P GC+R CT
Sbjct: 809 PLGCQRCCT 817
>AF036706-17|AAK39277.2| 582|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 1, isoform b protein.
Length = 582
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 313 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 468
EK +Y+ + EDF + + +FK G KS AR +I + V +
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESE 478
>AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical
protein Y20F4.2 protein.
Length = 473
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 393 QGWSCEVNPSCPHLDQTEAYSCPQ--AGGEHSFVHRP 497
Q W + S P++ Q +YS PQ +H HRP
Sbjct: 67 QPWGHNLGGSLPNVHQMPSYSPPQWPPNWQHEIQHRP 103
>AC024761-8|AAF59469.2| 335|Caenorhabditis elegans Hypothetical
protein Y38C1AA.3 protein.
Length = 335
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 321 LFLIKHSDPNQTT**S-IAFNQSLRILLLECQQFTGSLTDASERVLDA 181
L + HSD + TT + I NQSL + + + TG + SER++++
Sbjct: 18 LIWMVHSDNSATTNNNTILGNQSLEAIPEQLSELTGITVEESERIMES 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,525,055
Number of Sequences: 27780
Number of extensions: 261961
Number of successful extensions: 818
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -