Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J03
         (531 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   0.96 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   2.9  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   2.9  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   3.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   3.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   3.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   5.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   5.1  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 83  PSRYYYIVYHSGLKIFSISIILFCRLLILMIDF*LL 190
           P R+   ++ SGL+   + +  + RLL    DF LL
Sbjct: 264 PIRWVAKLWDSGLRKPGVGVFWYARLLYATADFVLL 299


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 413 IVKVYINVYYIKTTCFK*RTIPFINSNVKN 324
           +V++Y+ VY   +TC +    P I   ++N
Sbjct: 300 VVEIYLLVYACASTCEQANDTPSILHELRN 329


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 413 IVKVYINVYYIKTTCFK*RTIPFINSNVKN 324
           +V++Y+ VY   +TC +    P I   ++N
Sbjct: 300 VVEIYLLVYACASTCEQANDTPSILHELRN 329


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 451 LANLPYNMVLNIVIPHFK 504
           + N  YN +LNI + +F+
Sbjct: 18  IVNSKYNSILNIALKNFR 35


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 451 LANLPYNMVLNIVIPHFK 504
           + N  YN +LNI + +F+
Sbjct: 18  IVNSKYNSILNIALKNFR 35


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 294 EHKNFLFINDIFNIAVNKRNCPLFKASRFNIIYIYIN-FDDS 416
           EH N+   N++++    +   P++++ RF+I   Y+N FD+S
Sbjct: 36  EH-NYTHNNEMYHSVKEE---PIYESCRFSINQPYLNHFDNS 73


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 357 PLFKASRFNIIYIYIN-FDDS 416
           P++++ RF+I   Y+N FD+S
Sbjct: 53  PIYESCRFSINQPYLNHFDNS 73


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 357 PLFKASRFNIIYIYIN-FDDS 416
           P++++ RF+I   Y+N FD+S
Sbjct: 53  PIYESCRFSINQPYLNHFDNS 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,135
Number of Sequences: 336
Number of extensions: 2358
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)