Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J02
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    30   0.23 
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    30   0.23 
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    27   1.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.0  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   8.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.8  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 171 CKFIDKT*QKYCYKEH*LPFDYFRLKYPIXXXXXXXXXXILQIA---LFNGQLLNEKKRH 341
           C+   K   KYC KE   P   FRL+  I          +   +   LFN  L NE K  
Sbjct: 82  CRICGKIICKYCLKE--APGFIFRLQGSIKVCRPCASILVNNYSRSQLFNHSL-NESKNR 138

Query: 342 TIDK*RMHPVLLLDKNNNND 401
            + +   HP + LD+ N+ND
Sbjct: 139 DLTE--QHPFVTLDELNSND 156


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +3

Query: 324 NEKKRHTIDK*RMHPVLLLDKNNNNDTSSNIR*NNHLKTT*FIPTNITKTINYFNTC 494
           N K R  + K   +   +L   NN+   SNI   N  K T  I +N   T NY N C
Sbjct: 468 NSKNRTNVTKPNSYKNSVLSIGNNHSNHSNIIKPNTYKNT--ILSNENNTPNYSNVC 522


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 91  FLRGVSKALHILKSRKFEVISSNHQ*NVNSLTKHSKSIVIRSINYL 228
           +L  V K L +  S    ++  NH+  ++SLT H+  I      YL
Sbjct: 169 YLSTVFKNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVVFQYL 214


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 321  LNEKKRHTIDK*RMHPVLLLDKNNNND 401
            L+E +    D+  +    LLDKNNNND
Sbjct: 3251 LSEFQHQKFDEVEIPGQYLLDKNNNND 3277



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 294  EVLLSRYYFFICLSDI*V*NNQKVINA 214
            EV++S +YF  CLS++   +N K+ +A
Sbjct: 1052 EVIISPHYFAHCLSEVVCNDNSKMGDA 1078


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 172 HFIDGSTR*PQIFYFLGCVGLWI--RL*ENVERYKRVYCTPLI 50
           H + G  R  Q FY LGC  L    ++ ++V+ +  VY T +I
Sbjct: 245 HQVVGPPRKRQYFYVLGCSSLSALNQMSKHVDSFSDVYPTCII 287


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 76  CISLHFLRGVSKALHILKSRKFEVIS 153
           CI L F+ GVS + H+    K EV S
Sbjct: 605 CIGLQFVVGVSASSHLASQWKDEVWS 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,972
Number of Sequences: 5004
Number of extensions: 37408
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)