Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J02
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99942-9|CAB17073.3|  675|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AY652945-1|AAT73712.1|  675|Caenorhabditis elegans guanylate cyc...    28   3.4  
AL008867-4|CAD56232.2|  675|Caenorhabditis elegans Hypothetical ...    28   3.4  
U67955-1|AAB07585.1|  140|Caenorhabditis elegans Galectin protei...    27   6.0  
AB038500-1|BAB11965.1|  140|Caenorhabditis elegans galectin LEC-...    27   6.0  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z99942-9|CAB17073.3|  675|Caenorhabditis elegans Hypothetical
           protein C46E1.2 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 265 EKIIPRQQYFKSRFLTDNY*MRRNVIQLTNDACILCCYLTKTTIMTPVAISDKIT 429
           +++I  Q+ +K   + D+Y     +  L +D C + C+L    +M    + D IT
Sbjct: 483 DRLIGIQKAYKVETVGDSYMSVGGIPDLVDDHCEVICHLALGMVMEARTVCDPIT 537


>AY652945-1|AAT73712.1|  675|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 265 EKIIPRQQYFKSRFLTDNY*MRRNVIQLTNDACILCCYLTKTTIMTPVAISDKIT 429
           +++I  Q+ +K   + D+Y     +  L +D C + C+L    +M    + D IT
Sbjct: 483 DRLIGIQKAYKVETVGDSYMSVGGIPDLVDDHCEVICHLALGMVMEARTVCDPIT 537


>AL008867-4|CAD56232.2|  675|Caenorhabditis elegans Hypothetical
           protein C46E1.2 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 265 EKIIPRQQYFKSRFLTDNY*MRRNVIQLTNDACILCCYLTKTTIMTPVAISDKIT 429
           +++I  Q+ +K   + D+Y     +  L +D C + C+L    +M    + D IT
Sbjct: 483 DRLIGIQKAYKVETVGDSYMSVGGIPDLVDDHCEVICHLALGMVMEARTVCDPIT 537


>U67955-1|AAB07585.1|  140|Caenorhabditis elegans Galectin protein 9
           protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 148 ISSNHQ*NVNSLTKHSKSIVIRSINYLLIILDSNIR*TNEKII 276
           + S  Q  VN L KH K  V+  I+   I L  N R   +KI+
Sbjct: 20  VRSGLQIAVNGLVKHKKDFVVNLISGGNIALHVNFRFEKQKIV 62


>AB038500-1|BAB11965.1|  140|Caenorhabditis elegans galectin LEC-9
           protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 148 ISSNHQ*NVNSLTKHSKSIVIRSINYLLIILDSNIR*TNEKII 276
           + S  Q  VN L KH K  V+  I+   I L  N R   +KI+
Sbjct: 20  VRSGLQIAVNGLVKHKKDFVVNLISGGNIALHVNFRFEKQKIV 62


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 94   LRGVSKALHILKSRKFEVISSNHQ*NVNSLTKHSKSIVIRSINYLL 231
            LR VS  +H++   ++E ++ + +   + + +   SI  + IN+LL
Sbjct: 2596 LRRVSNRVHLIMKSEYEELAEHDEMIADIIPRDETSIQYKMINFLL 2641


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,255
Number of Sequences: 27780
Number of extensions: 201963
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)