Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J01
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    27   2.4  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   3.2  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    26   3.2  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   4.2  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.2  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    25   9.7  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   9.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.7  

>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 257 GHCTLFTSGRYVLAGTNNTNDDSGVMRSVKRLV 355
           G C++F S  Y L+GT N    +G   + +R +
Sbjct: 258 GFCSVFISSAYSLSGTENIGTAAGNTSNPQRAI 290


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 213  PVAGLSLVQPGYSQLVTVHCSPAAGMC*QAPTIQTTTVVLCVQ*NGW 353
            PV G++ + P   +     C  + G+C  +P    T+ V C +   W
Sbjct: 948  PVCGIAQLPPNRWEKKCEVCGNSFGVCVSSPNSGLTSHVTCAEKANW 994


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = +2

Query: 146 VVEKSDSRAVHERFPHALLFGGTCGGSIISPTW--ILTAGHCTLFTSGRYVLAGTNNTND 319
           +  K D    H+   HA   GG CGG   + T      A   TL  S  Y+        +
Sbjct: 209 ITGKIDEPTRHDIIRHACPGGGACGGMYTANTMASCAEAMGMTLPGSSSYLAGSPEKFAE 268

Query: 320 DSGVMRSVKRLVI 358
                 ++KRL++
Sbjct: 269 CEAAGSAIKRLLV 281


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 162  SDFSTTVFCSTAGLLLISDNFCF 94
            SDFS + FC    LLL+  ++C+
Sbjct: 938  SDFSISQFCYLKKLLLVHGSWCY 960


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 196 IAFRRHLWRVYH*SNLDTHSWSLYTVHQRP 285
           +A ++HL      +NLDT+S   Y +H+ P
Sbjct: 741 LAEKKHLKSQLMVANLDTYSLDCYEIHEFP 770


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 225 DPPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVCRRS 79
           D P +PP+  +  N S +  ++  S T   S + L +   + CF  RRS
Sbjct: 435 DKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFSTLKIPDSDICFTRRRS 483


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 224 SIISPTWILTAGHCTLFTSGRYV 292
           ++ +PTW+    H  L TSG+ +
Sbjct: 325 TVTNPTWLSLGNHFVLATSGQNI 347


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 190 RESLMHCSRVRLLYD 146
           +ESL+HC+R+R + D
Sbjct: 65  KESLLHCNRLRRIQD 79


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 228 IDPPQVPPKSNACGNL 181
           + PP  PP+SNA G++
Sbjct: 336 LPPPPPPPRSNAAGSI 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,340
Number of Sequences: 5004
Number of extensions: 43821
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)