Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J01
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1034 - 25562214-25562280,25562661-25562794,25562990-255631... 32 0.35
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 31 0.46
03_05_0395 - 23763531-23764493,23764539-23764708,23764750-237651... 31 0.80
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961... 30 1.4
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 30 1.4
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 1.8
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 29 2.4
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416 29 3.2
09_02_0321 - 7223393-7224751,7225971-7226063,7227801-7227947 28 5.6
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 28 5.6
03_06_0600 + 34988743-34989407,34990033-34990051 28 5.6
01_04_0066 - 15654796-15655098,15655268-15655392,15657249-156576... 27 7.5
12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464... 27 9.9
11_06_0635 + 25704214-25704360,25705198-25705656 27 9.9
10_07_0005 - 11744073-11745653 27 9.9
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706... 27 9.9
>12_02_1034 -
25562214-25562280,25562661-25562794,25562990-25563109,
25563331-25563510,25563847-25564020,25564466-25564639,
25564734-25564827,25566088-25566242
Length = 365
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 214 GASEKQCVRESLMHCSRVRLLYDCFLFHSRFTANFR*FLFC 92
G K CV ES+ H VR+ + LF +R N+ F+FC
Sbjct: 84 GHFRKGCVLESMEHYEEVRVKDNSLLFLNREKDNYLFFIFC 124
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 312 VLLVPANTYRPLVNSVQ*PAVSIQVGLMIDPPQVPPKSNACGNLSCTALES 160
VLL AN++ + V PA+++ V L+ PP + KS++ GN A ++
Sbjct: 903 VLLDAANSFGYVDPEVICPALNVLVNLVCPPPSISNKSSSTGNQQPAATQA 953
>03_05_0395 -
23763531-23764493,23764539-23764708,23764750-23765112,
23765298-23765508,23766214-23766381
Length = 624
Score = 30.7 bits (66), Expect = 0.80
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +2
Query: 92 TKQKLSEISSKPAVEQ--KTVVEKSDSRAVHERFPHALLFGGTCGGSIISPTWILTAGHC 265
+K+ +S KP +++ K + E D R+ GGT G I+ + L
Sbjct: 303 SKENMSRHLRKPKLDELRKLIYESMDEEEFERRWADFKENGGTGNGQWIALMYRLREKWA 362
Query: 266 TLFTSGRYVLAGTNNTNDDS 325
+T G+Y+L +N +S
Sbjct: 363 AAYTDGKYLLGMRSNQCSES 382
>03_06_0570 - 34794678-34795115,34795339-34795920,34796008-34796146,
34796261-34796402,34796504-34796621,34796713-34796820,
34796894-34796968,34797774-34798003,34798086-34798388,
34798949-34799130,34800288-34800371,34800799-34801391
Length = 997
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 312 VLLVPANTYRPLVNSVQ*PAVSIQVGLMIDPPQVPPKSNAC 190
VL VP++ + + + V+ VS+++G+ + PP P NAC
Sbjct: 899 VLGVPSSIHPVITDGVKPGEVSLEIGMTVPPP--APSCNAC 937
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 234 LMIDPPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVC 88
LM+D P + C L + + FST V GL L+SD+ +C
Sbjct: 567 LMLDRPLANSAHHYCKILCVRPIAAPFSTKVNFRVEGLNLVSDSSRLIC 615
>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 215 RCLRKAMRAGISHALLSSQTSLRLFSVPQQVY 120
+CL +A+ AG+ HALL S+ +L ++ + Y
Sbjct: 1366 KCLVQALDAGLEHALLGSEMTLDRYAAAEGFY 1397
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 164 SRAVHERFPHALLFGGTCGGSIISPTWILTAGHCTLFT 277
S VH P A GG G ++ PT I TA C T
Sbjct: 327 SGGVHHHLPFASAVGGGGGVGLLGPTTISTATSCPTVT 364
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 262 LYTV-HQRPVCVSRHQQY-KRRQWCYAFSETAGNPSAIQCR 378
LYT+ H+ P+C RH QY + R+ C A + + S CR
Sbjct: 454 LYTIIHRSPICPPRHLQYIQLREICTATGLWSPHVSEQYCR 494
>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
Length = 1030
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 200 LFGGTCGGSIISPTWILTAGHCTLFTSGRYVLAG 301
L+GG+ G ++S +WI + H T G Y +G
Sbjct: 371 LYGGSGQGKLVSFSWIGSLKHLTYLELGNYNFSG 404
>09_02_0321 - 7223393-7224751,7225971-7226063,7227801-7227947
Length = 532
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/68 (23%), Positives = 23/68 (33%)
Frame = -2
Query: 219 PQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVCRRSLAPGPAHAHAMSA 40
P PPK+ +C L+ A +D + N C +C L+ G
Sbjct: 43 PSPPPKTISCSALNAPADSTDEDQEKLEEPTSTRMADKNLCAICLEPLSTGSVDIDNGDR 102
Query: 39 TATETVNC 16
A T C
Sbjct: 103 PAIFTSQC 110
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 288 YRPLVNSVQ*PAVSIQVGLMIDPPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLIS 109
Y+P +V+ +VS+Q+G + + S++C NLS ++SD T +L S
Sbjct: 69 YKPFYGNVEVLSVSLQLGQVRVMNHI---SSSCYNLSSKEMDSDTWQLNMTGTPFMLSDS 125
Query: 108 DNFCFV-CR 85
+ F V CR
Sbjct: 126 NKFTVVGCR 134
>03_06_0600 + 34988743-34989407,34990033-34990051
Length = 227
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = -2
Query: 222 PPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVCRR--SLAPGPAHAHA 49
PP PP +SC F T V +G+ C C R SL P PA
Sbjct: 152 PPPPPPPPPGPRRISCRKCRGSFFTVVGDGVSGV------NCVHCNRWVSLFPCPARCAR 205
Query: 48 MSATATETVN 19
TETV+
Sbjct: 206 CGVRFTETVS 215
>01_04_0066 -
15654796-15655098,15655268-15655392,15657249-15657603,
15658236-15658405,15659404-15659608
Length = 385
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 227 IISPTWILTAGHCTLFTSGRYVLAGTNNTND 319
++S + GHC LF+S + G NN +D
Sbjct: 241 VLSGGHTIGIGHCNLFSSRLFNFTGKNNPSD 271
>12_01_0567 +
4641223-4641326,4641700-4642440,4642534-4642735,
4642830-4643285,4643382-4643774,4643868-4643870,
4645366-4645417,4645929-4646023
Length = 681
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 53 CACAGPGANDLLQTKQKLS 109
CACAGP N LL+ +LS
Sbjct: 474 CACAGPYGNILLEINNELS 492
>11_06_0635 + 25704214-25704360,25705198-25705656
Length = 201
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 227 IISPTWILTAGHCTLFTSGRYVLAGTNNTND-DSGVMRS 340
++S L HC+ FT Y G NN D D + RS
Sbjct: 58 VLSGGHTLGTAHCSAFTDRLYNFTGANNAGDVDPALDRS 96
>10_07_0005 - 11744073-11745653
Length = 526
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 116 SSKPAVEQKTVVEKSDSRAVHERFPHALLFGGTCGGSIISPT 241
+S A E + VV +A+H P LLF G GGSI+ T
Sbjct: 142 ASPAATELEMVVVDWLGKALH--LPERLLFAGGGGGSILGTT 181
>05_06_0206 +
26369089-26369143,26369627-26369733,26369814-26370647,
26370781-26370939,26371070-26371410,26373894-26373991,
26374244-26374350,26374715-26375266,26375366-26375524,
26375631-26376005
Length = 928
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 104 LSEISSKPAVEQKTVVEKSDSRAVHERFPHALLFGGTCGGSIISPTWI 247
L EI+ PA+E+ ++ + +A + FP +LLF GGS I ++
Sbjct: 565 LPEIAVTPAIEELILLLFPEDKANYYDFPFSLLFNR--GGSSIKHLYL 610
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,547
Number of Sequences: 37544
Number of extensions: 317556
Number of successful extensions: 915
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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