Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I24
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   1.7  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   3.0  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    26   4.0  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   4.0  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   5.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   6.6  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   7.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.3  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 399 KALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQ 524
           K + L  +   I++ K+ GQ TLN        +EK+V  FK+
Sbjct: 174 KLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKE 215


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 147 SLLKQLISGDYPDLLTLVRTYRPRSINPLDEMPAKLRAVVING-QHIFTFDG 299
           +L K +I  D  DLL  +    PRSIN + ++P  L    I+  ++ F++DG
Sbjct: 366 ALSKHIIFFDL-DLLNNISFPIPRSINAIQQLPCFLIDTGISAKEYDFSYDG 416


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 117 IPVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 245
           I +   +A  SLL+ L S   P +L  V   R  SI+PL+E P
Sbjct: 286 IEIVQSNALPSLLRLLRSSYLPLILASVACIRNISIHPLNESP 328


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 218 SWSVGTNQSKQVGIVSRYQLFEQT 147
           +W+ G   SK++G V R  +F+QT
Sbjct: 507 NWNAGLLYSKRLGPVGRAMIFQQT 530


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 257 AKFSRHFVKWVDRSWSVGTNQSKQVGIV 174
           A FS H +  V R W+  TN SK++GI+
Sbjct: 262 AYFS-HDISNVPRDWNKVTNYSKRLGII 288


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 22.6 bits (46), Expect(2) = 6.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 27  SLSQYIPSQVTGYAASGPTSWTSYLFSPASIPVWSG 134
           SL + + S   GY    PT       S +++P+ +G
Sbjct: 619 SLMKILESNADGYKQMSPTKAPQVFESESNVPINNG 654



 Score = 21.0 bits (42), Expect(2) = 6.6
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +3

Query: 216 RSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRN 362
           +SI+       +L  V   GQ    FDG   T P Q   +    ++D N
Sbjct: 657 QSIDKESNSNTQLPQVETEGQQQSVFDGNIGTIPYQAYNMNEDSFIDIN 705


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 477 AHGFPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLGK 629
           A G P I+  +  +K  +  +     + +   C+  L VC+   +G ++GK
Sbjct: 133 ASGIPTIKAILSGYKYPDMNVF----FSIKTLCSKSLAVCFSVASGLWVGK 179


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 573  CTSKLEVCYFEVNGFYLG 626
            C+S  E CYF+ + FY G
Sbjct: 4062 CSSWKEPCYFDDSDFYFG 4079


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,586
Number of Sequences: 5004
Number of extensions: 54930
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)