Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I24
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032...    30   1.4  
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991...    28   5.5  
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243     28   5.5  
03_02_0373 - 7865708-7866310,7869547-7870443                           28   5.5  
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949...    28   7.2  
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258     27   9.6  
03_06_0180 + 32175658-32178145,32178765-32178808                       27   9.6  

>04_04_1676 -
           35302498-35302836,35302911-35302997,35303063-35303286,
           35303375-35303675,35303762-35303860,35304895-35305032,
           35305108-35305326
          Length = 468

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 75  GPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDY 179
           G +  + YLF PA +P   GD  W LLK +I+ ++
Sbjct: 192 GGSGLSKYLFPPAKMPKGGGD--WPLLKDMIAQNH 224


>09_06_0123 -
           20997498-20997512,20998015-20998100,20999066-20999198,
           20999264-20999341,21000130-21000216,21001164-21001254,
           21001338-21001488,21001567-21002296,21002404-21002820
          Length = 595

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +3

Query: 60  GYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL--TLVRTYRPRSI-NP 230
           G    GP SW +   S A+   W   AS   LK L  G  P      +V + +P  + NP
Sbjct: 96  GIMGGGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAPSASEDLIVPSVQPHPVANP 155

Query: 231 L 233
           +
Sbjct: 156 I 156


>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
          Length = 403

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 93  SYLFSPASIPVWSGDASWSLLKQLISGDYP--------DLLTLVRTYRPRSINPLDEMPA 248
           S L + A+  V  GDA   +   L+SG++P         +       +P  ++ +DE   
Sbjct: 272 SSLAAAAASAVLCGDALHQIAFPLVSGEFPWTEAFNAVSIQLAALATKPSEVDAVDEAVG 331

Query: 249 KLRAVVING 275
           KL++V+ NG
Sbjct: 332 KLKSVLDNG 340


>03_02_0373 - 7865708-7866310,7869547-7870443
          Length = 499

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 VLSCEHPGMVWRRVMEFAQTADIWRLSRLA 190
           +L  EHPG+ WR +  F+ TA++    RLA
Sbjct: 118 LLGLEHPGVRWRAIRRFS-TAELLAPRRLA 146


>10_06_0006 -
           9496990-9497592,9497695-9497802,9497884-9497997,
           9498170-9498219,9498346-9498434,9498542-9498738,
           9498877-9499038,9499337-9499455,9499579-9499666,
           9499744-9499849,9499968-9500056,9500167-9500319,
           9500434-9500526,9500625-9500691,9500811-9500923,
           9501544-9501639,9501782-9501961
          Length = 808

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +3

Query: 315 PGQCRYVLIHDYVDR---NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAA 479
           P Q  Y +   ++++   N  +L +   G P  + +     G++    + G  VTL+  A
Sbjct: 679 PSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGA 738

Query: 480 HGFPVIEKDVFAFKQTNGRIG 542
           HG  +   DV +F    GR G
Sbjct: 739 HGRTISSVDVASFGVARGRCG 759


>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
          Length = 700

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 72  SGPTSWTSYLFSPASI--PVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 245
           S   SW     S   +  P+   ++ W LL+  +S D PDLL  V+   P  +  +  MP
Sbjct: 345 SSRISWFMGTVSAVQVADPIRWPNSPWRLLQ--VSWDEPDLLQNVKRVSPWLVELVSNMP 402

Query: 246 A 248
           A
Sbjct: 403 A 403


>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -1

Query: 313 KVKCLPSNVKM--CCP---LMTTARSLAGISSSGLIDRGL*VRTKVSKSG*SPDISCLSK 149
           K KCL    K+    P   L+T    ++G   +G +D+ L +   + KSG  PD   L  
Sbjct: 294 KCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVS 353

Query: 148 LHDASPDHTGMLAGE 104
           L  A  D  G   G+
Sbjct: 354 LLPALTDLNGFNQGK 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,330,495
Number of Sequences: 37544
Number of extensions: 399932
Number of successful extensions: 1063
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)