Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I24
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical pr...    34   0.075
U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.          34   0.075
AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical ...    34   0.075
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    30   1.6  
Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    29   3.7  
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      29   3.7  
Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    28   6.5  
AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine re...    27   8.6  

>Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +3

Query: 45  PSQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS 221
           P+Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P  
Sbjct: 323 PAQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVK 382

Query: 222 --INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 329
             ++   E  A+    ++     FT   KHL F   C+
Sbjct: 383 YWLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.
          Length = 550

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +3

Query: 45  PSQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS 221
           P+Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P  
Sbjct: 323 PAQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVK 382

Query: 222 --INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 329
             ++   E  A+    ++     FT   KHL F   C+
Sbjct: 383 YWLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +3

Query: 45  PSQVTGYAASGPTSWTSYLFSPASIPVWSGDASWSLLKQLISGDYPDLL-TLVRTYRPRS 221
           P+Q  GYA   P  W  +   PA   V   +     + +L  GD+   L     TY P  
Sbjct: 323 PAQPVGYAPYAPAGWQLHYCFPADAEVNVYEKGVKRMDELEVGDWVQALHGKETTYSPVK 382

Query: 222 --INPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCR 329
             ++   E  A+    ++     FT   KHL F   C+
Sbjct: 383 YWLHRDPEQEAEFVEFLLENGESFTLTEKHLVFATDCQ 420


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 217 DRSTHLTKCLLNFALWSSTDSTFSRSTANT 306
           D+ TH+T   ++ AL SSTDST S+S   T
Sbjct: 850 DKETHVTTTPVSVALPSSTDSTQSKSAIPT 879


>Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical
           protein K10D11.2 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 180 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 299
           P  +TLV+TY    IN   PL+     L+ VV +GQ  FTF G
Sbjct: 297 PTDMTLVKTYTGLEINKAVPLNFQGDVLQFVVSSGQADFTFKG 339


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 207 YRPRSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVL 338
           Y  R  N   +  A     +    H+ T+DG   T PG+  YVL
Sbjct: 837 YWRRMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYVL 880


>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 315 PGQCRYVLIHDYVDRNFTVLLQL--QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGF 488
           P QCR     DY  + +  +++    +GQP     E+K   +I+    G++  N   HG 
Sbjct: 672 PRQCRDF---DYNQQGYHAIMRAIEDSGQPVLWADENKHSAVIQ----GELQFNQNQHGI 724

Query: 489 PVIEKDVFAFKQTNG 533
            VIE+ +   K T G
Sbjct: 725 EVIEQFLQNIKSTIG 739


>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 225 NPLDEMPAKLRAVVING---QHIFTFDGKHLTFPGQCRYV 335
           +PLD  P K+ + +IN    ++  TFDG+   F   CR++
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 459 PVHCL*AQ*WFRSCPP 412
           P HCL  Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149


>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
           protein Y80D3A.2 protein.
          Length = 1467

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +3

Query: 183 DLLTLVRTYRPRSINPLDEMPAKLRAVVINGQHI-----FTFDGKHLTFPGQCRYVLIHD 347
           + +TL    RP  +  L+E P      VI  ++I     +T DG         +++ +HD
Sbjct: 415 ETITLHCERRPNQLTQLNEKPLFPTEKVIWDENIIPYENYTGDGVLALDKLNLQFLTLHD 474

Query: 348 YVDRNFTVLLQLQNGQPKALVLED 419
           Y+ RNF  L QL++       LED
Sbjct: 475 YLLRNFN-LFQLESTYEIRQDLED 497


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 459 PVHCL*AQ*WFRSCPP 412
           P HCL  Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149


>Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical
           protein F16H6.1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 384 QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTN 530
           Q+G PK+ + +D+SG      D G+   NG A GFP++E     +  TN
Sbjct: 98  QSGSPKSCLWDDQSG------DAGK--YNGFAPGFPLLEIGSCVYVPTN 138


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -1

Query: 397  GCPFCSCRSTVKFLST*SCINT*RHCPGKV---KCLPSNVKMCCPLM 266
            GCP C CRS  +FL+     N  R  P K    +C P  V  C P M
Sbjct: 1230 GCPICDCRSPCEFLNC-PAGNVCRMIPVKCTTPECRP--VAKCIPNM 1273


>Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.5 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 180 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 299
           P + T+V+ Y    IN   PL+     L+ VV +G+  FTFDG
Sbjct: 298 PTVGTIVKNYTALEINKAVPLNFQGEVLQFVVSSGKADFTFDG 340


>Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical
           protein F49C5.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 486 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 626
           FP+     + F  TN  IG      L +F     E C++  N  YLG
Sbjct: 125 FPLWHMKKYRFNPTNFGIGFSLLIALFSFAVLLPEGCHYLFNRDYLG 171


>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 559 PYLEPRPIRPLVCLNANTSFSMT 491
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 559 PYLEPRPIRPLVCLNANTSFSMT 491
           P  +PRPIRP+ C N  T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468


>AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine
           receptor, class x protein122 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 486 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 626
           FP+     + F  TN  IG+     + +F     E C++  N  YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAVFSFAVLLPEGCHYLFNRDYLG 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,829
Number of Sequences: 27780
Number of extensions: 323187
Number of successful extensions: 917
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)