Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I23
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   107   3e-24
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.     29   1.1  
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     29   1.1  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    29   1.1  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z66565-10|CAB76415.1|  281|Caenorhabditis elegans Hypothetical p...    29   1.4  
AL032659-2|CAB82215.1|  281|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    28   2.5  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.8  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    27   5.8  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    27   5.8  
Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    27   7.7  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  107 bits (257), Expect = 3e-24
 Identities = 54/102 (52%), Positives = 71/102 (69%)
 Frame = +2

Query: 41  IAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKR 220
           +A+GL KGH  T++           +K R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 221 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 346
            +E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+   R
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 100


>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 147 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 43
           MPF L G  L+AL++  FLP   + +LW  +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724


>Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical
           protein C34B4.1a protein.
          Length = 995

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 147 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 43
           MPF L G  L+AL++  FLP   + +LW  +R I+
Sbjct: 587 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 620


>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
          Length = 1045

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 147 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 43
           MPF L G  L+AL++  FLP   + +LW  +R I+
Sbjct: 637 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 670


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 147 MPFSLAGLILMALSVIPFLPADIFVVLWPFRRPIA 43
           MPF L G  L+AL++  FLP   + +LW  +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +2

Query: 56  RKGHKTTKISAGKKGITDKAIKIRPARLKGI----QTKHSKFVRDLVREVVGHAQYEKRA 223
           R   K  +  A K+    + ++    + +GI    Q +HS+ VR++ +      + EK+ 
Sbjct: 701 RPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYANATRKEKKK 760

Query: 224 MELLKVSKDKR 256
           +EL++++K K+
Sbjct: 761 VELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +2

Query: 56  RKGHKTTKISAGKKGITDKAIKIRPARLKGI----QTKHSKFVRDLVREVVGHAQYEKRA 223
           R   K  +  A K+    + ++    + +GI    Q +HS+ VR++ +      + EK+ 
Sbjct: 701 RPSKKVAEAKARKQKKMQRKLESAKKKAEGILENDQMEHSEKVREMKKVYANATRKEKKK 760

Query: 224 MELLKVSKDKR 256
           +EL++++K K+
Sbjct: 761 VELVRMTKGKK 771


>Z66565-10|CAB76415.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71H9A.3 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 331 YVAELFTLPLRADVCAEATLQELKGALIFR 242
           Y+  LFTLPL A  C +  +QE + A+IFR
Sbjct: 35  YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63


>AL032659-2|CAB82215.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71H9A.3 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 331 YVAELFTLPLRADVCAEATLQELKGALIFR 242
           Y+  LFTLPL A  C +  +QE + A+IFR
Sbjct: 35  YLVVLFTLPLSAFFCLK-VVQEYERAVIFR 63


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +2

Query: 125 RPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 262
           R   LK ++  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +2

Query: 125 RPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 262
           R   LK ++  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical
           protein T28D6.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 9   VNPKSWLPDLKSQLVCEKATKRQRYPLAKRVLQTKPLKLGQL 134
           V  +SWL   K +L+C  +   + YP AK  ++   L  G L
Sbjct: 168 VMQRSWLETDKDRLICSHSVCHEDYPPAKGCIRATVLISGYL 209


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = +2

Query: 38  EIAIGLRKGHKTTKISAGKKGITDKAIKIRP---ARLKGIQTKHSKFVRDLVREVVGHAQ 208
           E  + L K  +   I   KK      +K R    AR+K  + K  K + +  R+     +
Sbjct: 501 EETLKLEKRIEEVSIEESKKKQEKLELKQREEEEARIKEEEEKQRKILEEEARKKQEEEE 560

Query: 209 YEKRAMELLKVSKDKRALKFL--KRRLGTHIRAKRKREE 319
              +A E LK+ ++++  K L  +R+    +  KRK EE
Sbjct: 561 ARLKAEEELKIYEEEKRKKELEEERKKKEELEIKRKAEE 599


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 122 IRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 256
           ++  ++  + T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 170 VRDLVREVVGHAQYEKRAMELLKV 241
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 11   QSEIMAPRFEIAIGLRK----GHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRD 178
            ++E++A R ++   LR+     H+  +++   K  + K  +I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 179  LVREVVGHAQYE 214
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 11   QSEIMAPRFEIAIGLRK----GHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRD 178
            ++E++A R ++   LR+     H+  +++   K  + K  +I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 179  LVREVVGHAQYE 214
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 169 KLRVFGLNAL*PSWPNFNGFVCNTLFASGYLCRFVAFSQ 53
           KL V GL +L   W   +  + N  F +  +C FV FS+
Sbjct: 198 KLDVTGLTSL-TQWRKAHTVIMNDFFITADICDFVNFSE 235


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 179 LVREVVGHAQYEKRAMELLKV 241
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,844,678
Number of Sequences: 27780
Number of extensions: 173507
Number of successful extensions: 549
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)