Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I22
         (550 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FS6 Cluster: Dihydrodipicolinate reductase; n=1; Can...    36   0.47 
UniRef50_Q8ILR5 Cluster: Putative uncharacterized protein; n=1; ...    33   3.3  
UniRef50_Q8IIN6 Cluster: Putative uncharacterized protein; n=1; ...    33   4.4  

>UniRef50_Q05FS6 Cluster: Dihydrodipicolinate reductase; n=1;
           Candidatus Carsonella ruddii PV|Rep: Dihydrodipicolinate
           reductase - Carsonella ruddii (strain PV)
          Length = 232

 Score = 36.3 bits (80), Expect = 0.47
 Identities = 22/63 (34%), Positives = 36/63 (57%)
 Frame = +1

Query: 214 LLTGLDNDAFKQFSNNSYNFMFCILLT*TKYLCDME*LLLVSHHFSSQKYIDVSIYKKGN 393
           LL G++   +K+F NN YNF+F  L+T    + D       S+H+  +K + VS+Y K +
Sbjct: 29  LLGGINKKNYKKFINNKYNFIF-KLMTKNSVIIDF------SNHYMIKKILFVSLYYKIS 81

Query: 394 CIL 402
            I+
Sbjct: 82  LII 84


>UniRef50_Q8ILR5 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 3597

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 361  YIDVSIYKKGNCIL-FCF*YSHFSIMLIVNNIHSVEFADD 477
            +I+   YKKG C++  C+ ++++S+ +  NNI  + F  D
Sbjct: 1569 FINTQSYKKGMCVMSICYCFNYYSLNIYTNNIILLNFDKD 1608


>UniRef50_Q8IIN6 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1159

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 214  LLTGLDNDAFKQFSNNSYNFMFCILLT*TKYLCDME*LLLVSHHFSSQKYIDVSIYKKGN 393
            LL  + ND   ++S    NF + I+      L  +E LL ++   S +K +    +K G 
Sbjct: 906  LLCNISNDILNKYSKELMNFFYLIINKELNSLIKLEFLLFLNLFISRKKNVSTFFFKNGK 965

Query: 394  CIL 402
             IL
Sbjct: 966  DIL 968


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,999,084
Number of Sequences: 1657284
Number of extensions: 8012278
Number of successful extensions: 13422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13418
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)