Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I22
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.4  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.2  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    25   9.7  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 236 MPLNSFPIIHIILCFAYF*LKQNTCAIWNNYYW 334
           M   SF    + LCFA+  +K + C+  N YY+
Sbjct: 1   MIAKSFIASFLFLCFAFSGVKADGCSEENGYYY 33


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 338 LTNSNYSISHRYFV*VKSMQNIKLYELLENCLK 240
           L  + YSIS   +  V  +  ++L+E LENC+K
Sbjct: 306 LNGTYYSISD--YTDVYGVDELQLFESLENCIK 336


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 334 VSHHFSSQKYIDVSIYKKGNCILFC 408
           V H  +++ YI+++  ++G+ ILFC
Sbjct: 139 VPHPPNTEYYININSVREGDWILFC 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,461
Number of Sequences: 5004
Number of extensions: 37704
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)