Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I22
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1124 - 34279570-34279765,34280074-34280158,34280236-342802...    29   2.4  
04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686...    27   9.9  

>02_05_1124 -
           34279570-34279765,34280074-34280158,34280236-34280275,
           34280371-34280460
          Length = 136

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 308 CAIWNNYYWSVIIFRHKSILMFLFIKKEIVFFFAFNIPTFL 430
           CA++NN+ W ++     ++LM+L +   ++FF   N P+ +
Sbjct: 32  CALYNNW-WPML-----TVLMYLILPMPLIFFLGSNSPSMM 66


>04_04_0289 +
           24167246-24167411,24167584-24167708,24167744-24168694,
           24168788-24168940,24169251-24169475,24170102-24170587
          Length = 701

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 293 LKQNTCAIWNNYYWSVIIFRHKSILMFLF 379
           LK+  C   NN YW    F+H S+ M +F
Sbjct: 479 LKRTLCEK-NNIYWEPSDFKHYSLTMLIF 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,383
Number of Sequences: 37544
Number of extensions: 183619
Number of successful extensions: 208
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)