Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I22
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila disc...    27   8.9  
AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein...    27   8.9  
AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like pr...    27   8.9  

>U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical
           protein T18H9.7a protein.
          Length = 803

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 16  RHRTFSDITTTVN*IPGLPIHYKSIRVFNMVR 111
           RH+T +DI T      G  + Y+  ++FNM R
Sbjct: 216 RHKTSTDIETRTGRTKGKNLKYQMNKLFNMFR 247


>U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila discs
           large homologprotein 1, isoform a protein.
          Length = 967

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 498 GRLLVNPVICEFDTVNIINY*HYRKVGILKAKKNTISFFINR 373
           GRL V   I E D  ++IN  H   V +LK   N +   I +
Sbjct: 405 GRLRVGDKILEVDHHSLINTTHENAVNVLKNTGNRVRLLIQQ 446


>AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein
           DLG-1 protein.
          Length = 967

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 498 GRLLVNPVICEFDTVNIINY*HYRKVGILKAKKNTISFFINR 373
           GRL V   I E D  ++IN  H   V +LK   N +   I +
Sbjct: 405 GRLRVGDKILEVDHHSLINTTHENAVNVLKNTGNRVRLLIQQ 446


>AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like
           protein DLG-1 protein.
          Length = 967

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 498 GRLLVNPVICEFDTVNIINY*HYRKVGILKAKKNTISFFINR 373
           GRL V   I E D  ++IN  H   V +LK   N +   I +
Sbjct: 405 GRLRVGDKILEVDHHSLINTTHENAVNVLKNTGNRVRLLIQQ 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,927,066
Number of Sequences: 27780
Number of extensions: 204928
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)