Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I21
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -3

Query: 375 HHTPTNRVEWIRDDTGDCGD--GLR 307
           H  PT  + W+R D    GD  GLR
Sbjct: 48  HGNPTPDIIWVRSDGTAVGDVPGLR 72


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 339 DDTGDCGDGLRDGPADDDGG 280
           DD+G    G RDG   D GG
Sbjct: 89  DDSGGGRGGGRDGDRGDGGG 108


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 466 FFKGAFSNVLRGTGGAFVLVLYDEI 540
           F    ++  L  TGG  V+ L DEI
Sbjct: 507 FRPNTYNRFLAATGGDHVISLIDEI 531


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 285 HRHQLGHRANRHHSR 329
           H HQ G  A  HH +
Sbjct: 14  HHHQSGSVAGHHHEQ 28


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 276 EHPHRHQ 296
           EHPH+HQ
Sbjct: 22  EHPHQHQ 28


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 104 SPLPTSAARRVRAKSSGYTKQSEVAPAAPPD 12
           SPL  SAA R  ++ +  ++    A +A PD
Sbjct: 115 SPLFHSAAPRTASRETKSSESDSGASSADPD 145


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 276 EHPHRHQ 296
           EHPH+HQ
Sbjct: 22  EHPHQHQ 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,234
Number of Sequences: 336
Number of extensions: 3124
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)