Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I20
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 225 1e-60
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 134 6e-33
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 123 8e-30
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 70 1e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 57 1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 8e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 34 0.006
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 31 0.044
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 1.2
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 2.9
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 25 3.8
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 5.0
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.0
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 6.7
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 24 6.7
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 24 8.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 24 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 225 bits (551), Expect = 1e-60
Identities = 105/121 (86%), Positives = 113/121 (93%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYV
Sbjct: 160 THTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYV 219
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
ALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE Y
Sbjct: 220 ALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATY 279
Query: 370 N 372
N
Sbjct: 280 N 280
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 134 bits (323), Expect = 6e-33
Identities = 58/121 (47%), Positives = 84/121 (69%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV
Sbjct: 160 THIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYV 219
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVY 369
+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E ++
Sbjct: 220 SYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIF 279
Query: 370 N 372
+
Sbjct: 280 D 280
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 123 bits (297), Expect = 8e-30
Identities = 54/116 (46%), Positives = 78/116 (67%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
+H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYV
Sbjct: 165 THSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYV 224
Query: 190 ALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH 357
A DF E+ + +Y+LPD Q IT+G E F PE LF P +G E+ G+H
Sbjct: 225 ASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLH 280
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 70.1 bits (164), Expect = 1e-13
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 20/139 (14%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
+H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV
Sbjct: 168 THIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKESVCYV 225
Query: 190 ALDFEQEMATA--AASTSLEKSYELPD------------------GQVITIGNERFRCPE 309
+ +F+++M + LE Y LPD QV+ + NERF PE
Sbjct: 226 SQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPE 285
Query: 310 ALFQPSFLGMESCGIHETV 366
LF PS + + GI E V
Sbjct: 286 LLFSPSDIEIREAGIPEAV 304
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 56.8 bits (131), Expect = 1e-09
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLC 183
+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER IKE+ C
Sbjct: 191 THIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECC 245
Query: 184 YVALDFEQEMA--TAAASTSLEKSYELPDGQ--VITIGNERFRCPEALFQP 324
YV D +E + L+ + E G I +G ERF PE F P
Sbjct: 246 YVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.0 bits (99), Expect = 8e-06
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Frame = +1
Query: 127 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 306
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 307 EALFQPSFLGMESC---------GIHETVY 369
E LF PSF S G+HE VY
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVY 329
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 34.3 bits (75), Expect = 0.006
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 220 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 324
++ +T E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 31.5 bits (68), Expect = 0.044
Identities = 18/79 (22%), Positives = 33/79 (41%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV 189
SH +P+ G + R+ G + YL+K+ + SF + C+V
Sbjct: 177 SHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHV 236
Query: 190 ALDFEQEMATAAASTSLEK 246
+ D+ ++A A LE+
Sbjct: 237 SSDYTHDIAHALDRDILER 255
Score = 29.5 bits (63), Expect = 0.18
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 289 ERFRCPEALFQPSFLGMESCGIHE 360
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 1.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 26 STKVTPCPTPSSVWTW 73
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 2.9
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +1
Query: 25 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 132
+ EG +P++ ++++ G D+T MK+L + +
Sbjct: 308 VEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.0 bits (52), Expect = 3.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 5 EALTPCPSTKVTPCPTPSSVW 67
E +TP P K P P P + W
Sbjct: 73 ETVTPLPRAKPLPKPKPETKW 93
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 181 CYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCP 306
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 5.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 166 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 273
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 263 TVR*SPSVTRGSVAPKLSSSPRSWVWNRAASTRPST 370
T+ + SV+ GSV P S++ S WN + S +T
Sbjct: 139 TMNSTGSVSGGSVYPTNSTTNSSISWNSSTSAATNT 174
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 24.2 bits (50), Expect = 6.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 14 TPCPSTKVTPCPTPSS 61
TP P+T TP PT +S
Sbjct: 942 TPTPTTTTTPTPTTTS 957
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 23.8 bits (49), Expect = 8.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 211 MATAAASTSLEKSYELPDG 267
M+T +TS+ SY+LP G
Sbjct: 444 MSTTPLATSVNNSYKLPSG 462
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 23.8 bits (49), Expect = 8.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 275 SPSVTRGSVAPKLSSSPRSWVWNRAAST 358
+P+V GS P ++ R+ WN + T
Sbjct: 818 TPAVANGSRTPAWNTGSRTPAWNSGSKT 845
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,477
Number of Sequences: 5004
Number of extensions: 23975
Number of successful extensions: 101
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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