Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I19
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 34 0.015
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 30 0.19
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 28 1.0
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 26 3.1
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 4.1
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 5.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.2
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 25 7.2
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 9.5
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 9.5
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 33.9 bits (74), Expect = 0.015
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 341 QQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASLQAGWLRR 520
Q L P + + W +A A+ P ++ +PV +GF +++ R Q +Q + +R
Sbjct: 188 QAALYVKPPNYNQQKWDEAVANRPS-NSVVPVLAVGFPDVQKRINMQIQQVNTYRIRMRE 246
Query: 521 AGETL 535
ETL
Sbjct: 247 IVETL 251
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 30.3 bits (65), Expect = 0.19
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +2
Query: 101 SLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVVDKGANGTHISASELAAFLN 259
SL+SL+GNK N S KA SESKSQ G N A L + +N
Sbjct: 543 SLNSLVGNKSE---NSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYNLKSHMN 592
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -1
Query: 341 EAFEVRVK*PESQWSIRCQSVLFSLHRRLEKQLIPKRIYGFHSLPYRPRILPPGFYS 171
+ F+++++ ES W +R Q + L + K + K+ SL PR+ P +S
Sbjct: 196 DRFKIKLETEESNWKVRLQVLESKLATQDRKLRMQKKSTERKSLLVSPRVSSPKLFS 252
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 232 GYMGSI-RSLIDHVYYHLAFTLGHRFNR 152
G M ++ R ++D Y A+T GH FNR
Sbjct: 1071 GRMANLWRFVLDVTYPQAAYTTGHEFNR 1098
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 335 MLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPI 442
+L+Q TP AG + Q Q P P +P PI
Sbjct: 331 LLRQTTTTPFAGNQVMPTPQVQGSRPPPPPPMPAPI 366
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 104 LHSLLGNKPNLAVNIESIKAVSESKSQVVIYVVDKGAN 217
+++ L PN+ NI ++ + + +V Y+V +G N
Sbjct: 757 INTHLSRHPNVRENITLVRRDKDEEPTLVAYIVPQGLN 794
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 47 LFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVV 190
L+N +++ NN+Q + S +SL + + ++ V E+K+ V
Sbjct: 315 LYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSELQVVKENKNTSV 362
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 315 SLHPHLKCFSNTSKHHQQVWICDCGNKHKPTIPIQIITYQY 437
SL P F++ S C N HK I I+ I++QY
Sbjct: 202 SLIPFFDIFNHKSGPAIASLHCQESNDHKGDIKIEFISFQY 242
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 119 GNKPNLAVNIESIKAVSESKSQVVIYVVDK 208
G+ + VN+E+ SE+ V +YV+DK
Sbjct: 383 GSAGEMYVNVETRSIQSENIGNVSLYVLDK 412
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 293 RCQSVLFSLHRRLEKQLIP 237
R QS++F L+++ EK+ IP
Sbjct: 103 RIQSIIFELNQQCEKESIP 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,720
Number of Sequences: 5004
Number of extensions: 43573
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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