Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I19
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290...    31   0.58 
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135...    31   0.58 
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068...    28   4.1  
07_03_0145 - 14376610-14377992                                         28   5.4  
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    27   7.2  
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     27   9.5  
05_01_0127 - 863755-865182                                             27   9.5  
05_01_0124 + 852358-853257                                             27   9.5  

>05_06_0136 +
           25928152-25928659,25928767-25928899,25928987-25929058,
           25929150-25929221,25929507-25929670,25929760-25930025,
           25930115-25930241,25930599-25930667,25930765-25930957,
           25931053-25931299,25931342-25931470,25932367-25932654
          Length = 755

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 95  ITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 202
           + SL  L GN PNL  N  S +A ++ KS++ IY+V
Sbjct: 256 LPSLTVLYGNNPNLCTNDNSCQA-AKHKSKLAIYIV 290


>01_01_0154 -
           1355601-1356102,1356197-1356389,1356465-1356520,
           1356997-1357066,1357188-1357314,1357418-1357695,
           1357908-1358065,1358166-1358246,1358339-1358410,
           1358531-1358602,1358729-1358867,1358987-1360045,
           1360170-1360257
          Length = 964

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 101 SLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 202
           SL+   GN PNL +N  S KA ++ KS++ IY V
Sbjct: 500 SLNVRYGNNPNLCINGNSCKA-AKKKSKLAIYTV 532


>05_06_0133 +
           25905455-25905545,25905650-25906202,25906310-25906806,
           25906905-25907043,25907182-25907253,25907344-25907415,
           25907503-25907583,25907899-25908065,25908148-25908416,
           25908512-25908638,25908752-25908820,25908928-25909120,
           25909215-25909707
          Length = 940

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 101 SLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 202
           SL+   GN PNL  N +S +  ++ KS++ IY+V
Sbjct: 498 SLNLRYGNNPNLCTNGDSCQP-AKKKSKLAIYIV 530


>07_03_0145 - 14376610-14377992
          Length = 460

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 296 CSTVTPVTSPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYI 430
           C T++ ++ P   ++   L      +D + WK     +P P N I
Sbjct: 27  CETISVISMPKTGIVSDSLPVSSIDVDKKKWKSVIIGDPRPKNRI 71


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 528 SPARRNQPAWRLACSAWHCALNFISEKPII 439
           SP R   P   + C++W  A++ ISEK +I
Sbjct: 624 SPGRVGAPLVFVICNSWSQAMDRISEKEVI 653


>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 26  KDGHVAMLFN-KSEQDIKNNQQAFITSLHSLLGNKPNLAV-NIESIKAVSESKSQVVIYV 199
           +DG V+  +  K +QD  N Q  FIT  +S    + N +V  +E+I  + +       Y 
Sbjct: 506 EDGDVSKKYEEKIKQDDNNFQSEFITERYSKCSKEDNNSVIQVETIATICKQDDLDDCYS 565

Query: 200 VDKGANGTH-ISASELAAFLN 259
                N  H I  S+L + +N
Sbjct: 566 ELLSPNSEHAIMPSKLESSVN 586


>05_01_0127 - 863755-865182
          Length = 475

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 314 PESQWSIRCQSVLFSLHRRLEKQLIPKRI 228
           P   WS+RC   L  L R +  +L+ +R+
Sbjct: 330 PSPSWSVRCSIYLNRLPREVSDELMEERV 358


>05_01_0124 + 852358-853257
          Length = 299

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 314 PESQWSIRCQSVLFSLHRRLEKQLIPKRI 228
           P   WS+RC   L  L R +  +L+ +R+
Sbjct: 150 PSPSWSVRCSIYLNRLPREVSDELMEERV 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,557,277
Number of Sequences: 37544
Number of extensions: 303599
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)