Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I19
(536 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein... 129 5e-30
BX538002-1|CAD97957.1| 291|Homo sapiens hypothetical protein pr... 125 9e-29
AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa varia... 125 9e-29
AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa varia... 125 9e-29
AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens ... 123 4e-28
BC016440-1|AAH16440.1| 408|Homo sapiens NARF protein protein. 30 6.0
BC000438-1|AAH00438.1| 502|Homo sapiens NARF protein protein. 30 6.0
AK000929-1|BAA91432.1| 456|Homo sapiens protein ( Homo sapiens ... 30 6.0
AF128406-1|AAD51446.1| 456|Homo sapiens nuclear prelamin A reco... 30 6.0
BC037563-1|AAH37563.1| 770|Homo sapiens component of oligomeric... 29 7.9
BC024300-1|AAH24300.1| 605|Homo sapiens FSTL4 protein protein. 29 7.9
BC000549-1|AAH00549.1| 770|Homo sapiens component of oligomeric... 29 7.9
AB028984-1|BAA83013.1| 693|Homo sapiens KIAA1061 protein protein. 29 7.9
>AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein
protein.
Length = 505
Score = 129 bits (312), Expect = 5e-30
Identities = 63/156 (40%), Positives = 95/156 (60%), Gaps = 2/156 (1%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYV 199
+D+DG V ++FNK E +I++ QQ + SLH +LG L VN+E K + + +++VVIYV
Sbjct: 184 KDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYV 243
Query: 200 VDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQQYLQTPPAGM 373
V++ NGT + A+ L A LN ++T T SP ++Q LQ PPAG+
Sbjct: 244 VERSPNGTSRRVPATTLYAHLNKPYKNTIAATGVTLSMTR-TELSPAQIKQLLQNPPAGV 302
Query: 374 DMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQ 481
D +W+QA+ DNPD + IPVP++GF E+ R + Q
Sbjct: 303 DPIIWEQAKVDNPDSEKVIPVPMVGFKELLRRLKVQ 338
>BX538002-1|CAD97957.1| 291|Homo sapiens hypothetical protein
protein.
Length = 291
Score = 125 bits (302), Expect = 9e-29
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYV 199
+D+DG V ++FNK E +I++ QQ + SLH +LG L VN+E K + + +++VVIYV
Sbjct: 5 KDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYV 64
Query: 200 VDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQQYLQTPPAGM 373
V++ NGT + A+ L A + T SP ++Q LQ PPAG+
Sbjct: 65 VERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGV 124
Query: 374 DMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQ 481
D +W+QA+ DNPD + IPVP++GF E+ R + Q
Sbjct: 125 DPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 160
>AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 507
Score = 125 bits (302), Expect = 9e-29
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYV 199
+D+DG V ++FNK E +I++ QQ + SLH +LG L VN+E K + + +++VVIYV
Sbjct: 185 KDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYV 244
Query: 200 VDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQQYLQTPPAGM 373
V++ NGT + A+ L A + T SP ++Q LQ PPAG+
Sbjct: 245 VERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGV 304
Query: 374 DMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQ 481
D +W+QA+ DNPD + IPVP++GF E+ R + Q
Sbjct: 305 DPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 340
>AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 508
Score = 125 bits (302), Expect = 9e-29
Identities = 60/156 (38%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYV 199
+D+DG V ++FNK E +I++ QQ + SLH +LG L VN+E K + + +++VVIYV
Sbjct: 186 KDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYV 245
Query: 200 VDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQQYLQTPPAGM 373
V++ NGT + A+ L A + T SP ++Q LQ PPAG+
Sbjct: 246 VERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGV 305
Query: 374 DMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQ 481
D +W+QA+ DNPD + IPVP++GF E+ R + Q
Sbjct: 306 DPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 341
>AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens
cDNA FLJ10655 fis, clone NT2RP2005933, weakly similar to
NUCLEOPORIN NUP57. ).
Length = 484
Score = 123 bits (297), Expect = 4e-28
Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYV 199
+D+DG V ++FNK E +I++ QQ + SLH +LG L V++E K + + +++VVIYV
Sbjct: 185 KDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVSVEGTKTLPDDQTEVVIYV 244
Query: 200 VDKGANGT--HISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQQYLQTPPAGM 373
V++ NGT + A+ L A + T SP ++Q LQ PPAG+
Sbjct: 245 VERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGV 304
Query: 374 DMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQ 481
D +W+QA+ DNPD + IPVP++GF E+ R + Q
Sbjct: 305 DPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 340
>BC016440-1|AAH16440.1| 408|Homo sapiens NARF protein protein.
Length = 408
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 8 RHEGEDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIE 151
RH+G DGH+A +F + +++ N +T + L NK V +E
Sbjct: 241 RHDGASSDGHLAHIFRHAAKELFNEDVEEVT--YRALRNKDFQEVTLE 286
>BC000438-1|AAH00438.1| 502|Homo sapiens NARF protein protein.
Length = 502
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 8 RHEGEDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIE 151
RH+G DGH+A +F + +++ N +T + L NK V +E
Sbjct: 335 RHDGASSDGHLAHIFRHAAKELFNEDVEEVT--YRALRNKDFQEVTLE 380
>AK000929-1|BAA91432.1| 456|Homo sapiens protein ( Homo sapiens
cDNA FLJ10067 fis, clone HEMBA1001526, weakly similar to
PERIPLASMIC [FE] HYDROGENASE 1 (EC 1.18.99.1). ).
Length = 456
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 8 RHEGEDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIE 151
RH+G DGH+A +F + +++ N +T + L NK V +E
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVEEVT--YRALRNKDFQEVTLE 334
>AF128406-1|AAD51446.1| 456|Homo sapiens nuclear prelamin A
recognition factor protein.
Length = 456
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 8 RHEGEDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIE 151
RH+G DGH+A +F + +++ N +T + L NK V +E
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVEEVT--YRALRNKDFQEVTLE 334
>BC037563-1|AAH37563.1| 770|Homo sapiens component of oligomeric
golgi complex 7 protein.
Length = 770
Score = 29.5 bits (63), Expect = 7.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 29 DGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIK-AVSESKSQVVIYVVD 205
DGH A L K + I+ A + H L N P + ++E++K S K Q+++ D
Sbjct: 34 DGHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKED 93
>BC024300-1|AAH24300.1| 605|Homo sapiens FSTL4 protein protein.
Length = 605
Score = 29.5 bits (63), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 354 KHHQQVWICDCGNKHKPTIPIQIIT 428
K H QVW+ G+ HK +Q+IT
Sbjct: 551 KSHDQVWVLSWGDVHKSRPSLQVIT 575
>BC000549-1|AAH00549.1| 770|Homo sapiens component of oligomeric
golgi complex 7 protein.
Length = 770
Score = 29.5 bits (63), Expect = 7.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 29 DGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKPNLAVNIESIK-AVSESKSQVVIYVVD 205
DGH A L K + I+ A + H L N P + ++E++K S K Q+++ D
Sbjct: 34 DGHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKED 93
>AB028984-1|BAA83013.1| 693|Homo sapiens KIAA1061 protein protein.
Length = 693
Score = 29.5 bits (63), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 354 KHHQQVWICDCGNKHKPTIPIQIIT 428
K H QVW+ G+ HK +Q+IT
Sbjct: 402 KSHDQVWVLSWGDVHKSRPSLQVIT 426
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,689,830
Number of Sequences: 237096
Number of extensions: 1710204
Number of successful extensions: 3400
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3395
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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