Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I19
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 62 2e-10
Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical p... 62 2e-10
Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical p... 62 2e-10
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 33 0.099
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 33 0.099
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 33 0.099
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 32 0.30
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 32 0.30
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 30 0.92
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 30 1.2
Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GA... 28 3.7
AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GA... 28 3.7
AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GA... 28 3.7
AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GA... 28 3.7
AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GA... 28 3.7
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 6.5
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 62.5 bits (145), Expect = 2e-10
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Frame = +2
Query: 5 RRHEGEDKDGHVAMLFNKSEQDIKNNQQA--FITSLHSLLGNKPNLAVNIE---SIKAVS 169
R E D +G V ++ ++ ++ + + ++LG PN+ V S++ +S
Sbjct: 319 RISERTDDEGFVTLVLRHPITNLNTEERRDKILEIIKAILGGGPNVEVRYAPGTSMRTLS 378
Query: 170 ESKSQVVIYVVDKGANGTHISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQQY 349
+ +++ I + G I +++ + V P S +Y
Sbjct: 379 DGCTEICIIAKEGGFVAGAIKLAQILNDAPKMTQLESQLQVDKTRVLPKVGMSKAQRDRY 438
Query: 350 LQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASL 499
L+T P G+D R+W+QA +NP P+ +PVP+ G+ ++ R + Q ++ L
Sbjct: 439 LETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQVGESKL 488
>Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical
protein K07F5.13b protein.
Length = 549
Score = 62.5 bits (145), Expect = 2e-10
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Frame = +2
Query: 5 RRHEGEDKDGHVAMLFNKSEQDIKNNQQA--FITSLHSLLGNKPNLAVNIE---SIKAVS 169
R E D +G V ++ ++ ++ + + ++LG PN+ V S++ +S
Sbjct: 229 RISERTDDEGFVTLVLRHPITNLNTEERRDKILEIIKAILGGGPNVEVRYAPGTSMRTLS 288
Query: 170 ESKSQVVIYVVDKGANGTHISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQQY 349
+ +++ I + G I +++ + V P S +Y
Sbjct: 289 DGCTEICIIAKEGGFVAGAIKLAQILNDAPKMTQLESQLQVDKTRVLPKVGMSKAQRDRY 348
Query: 350 LQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASL 499
L+T P G+D R+W+QA +NP P+ +PVP+ G+ ++ R + Q ++ L
Sbjct: 349 LETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQVGESKL 398
>Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical
protein K07F5.13a protein.
Length = 612
Score = 62.5 bits (145), Expect = 2e-10
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Frame = +2
Query: 5 RRHEGEDKDGHVAMLFNKSEQDIKNNQQA--FITSLHSLLGNKPNLAVNIE---SIKAVS 169
R E D +G V ++ ++ ++ + + ++LG PN+ V S++ +S
Sbjct: 292 RISERTDDEGFVTLVLRHPITNLNTEERRDKILEIIKAILGGGPNVEVRYAPGTSMRTLS 351
Query: 170 ESKSQVVIYVVDKGANGTHISASELAAFLNXXXXXXXXXXXXCSTVTPVTSPSPQMLQQY 349
+ +++ I + G I +++ + V P S +Y
Sbjct: 352 DGCTEICIIAKEGGFVAGAIKLAQILNDAPKMTQLESQLQVDKTRVLPKVGMSKAQRDRY 411
Query: 350 LQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFRAQCQAEQASL 499
L+T P G+D R+W+QA +NP P+ +PVP+ G+ ++ R + Q ++ L
Sbjct: 412 LETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQVGESKL 461
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 33.5 bits (73), Expect = 0.099
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 274 NSTDWHRMLHCDSGHFTLTSNASAIPPNTTSRYGY 378
N+ DWH D H + S IPP T +YGY
Sbjct: 57 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 91
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 33.5 bits (73), Expect = 0.099
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 274 NSTDWHRMLHCDSGHFTLTSNASAIPPNTTSRYGY 378
N+ DWH D H + S IPP T +YGY
Sbjct: 989 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 1023
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 33.5 bits (73), Expect = 0.099
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 274 NSTDWHRMLHCDSGHFTLTSNASAIPPNTTSRYGY 378
N+ DWH D H + S IPP T +YGY
Sbjct: 989 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 1023
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 238 GISCFSKRRCSENSTDWHRMLHCDSGHFTLTSNASAIPPNTTSR 369
G SC + C++ ST + C G+ ++ N A+P +TT +
Sbjct: 837 GASCNANTVCTKGSTCESGLCRCQPGYIAVSGNCVALPMSTTPK 880
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 238 GISCFSKRRCSENSTDWHRMLHCDSGHFTLTSNASAIPPNTTSR 369
G SC + C++ ST + C G+ ++ N A+P +TT +
Sbjct: 934 GASCNANTVCTKGSTCESGLCRCQPGYIAVSGNCVALPMSTTPK 977
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 30.3 bits (65), Expect = 0.92
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 66 CSDLLNNMATCPSLSSPSC 10
C+++L CPS+SSPSC
Sbjct: 111 CANMLQTQCGCPSISSPSC 129
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 320 SPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIG 448
SP P + Q+ QTPP M ++ + DN +PDN + I G
Sbjct: 895 SPQPNLHLQHHQTPP--MQSQMMQPVVTDNFEPDNDQTIRING 935
>Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical
protein T21C12.1f protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical
protein T21C12.1e protein.
Length = 506
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical
protein T21C12.1d protein.
Length = 475
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1c protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1b protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49C protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.3 protein.
Length = 506
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.2 protein.
Length = 475
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.1 protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49A protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 EDKDGHVAMLFNKSEQDIKNNQQAFITSLHSLLGNKP---NLAVNIESIKAVSE 172
+D+D H+ S D N+ + L G KP + +++ SI AVSE
Sbjct: 23 QDEDSHINTQLLSSVLDRLTNRTTYDKRLRPRYGEKPVDVGITIHVSSISAVSE 76
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +2
Query: 311 PVTSPSPQMLQQYLQTPPAGMDMRLWKQAQADNPDPDNYIPVPIIGFSEIKFR---AQCQ 481
P P PQ Q Y+Q P + ++Q Q P P P P I F + R A C
Sbjct: 2045 PQPQPQPQPQQPYIQRPALTLP---FQQPQYPPPIPFQPRPAPFIPFQPMVQRPSPAGCC 2101
Query: 482 AEQASLQAGWL 514
Q Q G L
Sbjct: 2102 GGQLFSQQGGL 2112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,208
Number of Sequences: 27780
Number of extensions: 252099
Number of successful extensions: 782
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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