Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I18
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.3  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   4.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   4.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.3  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    25   5.3  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   5.3  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   7.0  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   7.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.0  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   7.0  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.3  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   9.3  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 353 TSRLWVQ-NGRMYTTSLCTATLNSTCSI 433
           TSR+ V+   R+Y  S+CT T+N + SI
Sbjct: 183 TSRMIVELKNRLYECSVCTDTINPSTSI 210


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 431 SNTSNLVSQY-IRTSYTFFHFAPTISMF 351
           + TS +++Q+ + + Y FFH  P+IS F
Sbjct: 741 ATTSCMLAQFALHSPYAFFHDIPSISHF 768


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 341 EYLKTSRLW-VQNGRMYTTSLCTATLNS 421
           E LK    W V NG +Y   LC+ + NS
Sbjct: 30  EELKVRNAWNVTNGHVYCIHLCSRSANS 57


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 109 SPLAAIYVDSGYDSSSILNSFDLFSLLIPS 20
           SP ++ Y  S  +SSS+L+   + S ++PS
Sbjct: 122 SPTSSEYTPSSTESSSLLDPSSVSSAILPS 151


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 42  KSNEFKILDESYPLST*MAASGEMWVIQTTPET 140
           K  E  I +  + L    A++GEMWV+  T  T
Sbjct: 152 KEEEIYINESIHVLCRKKASNGEMWVLNATLST 184


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 12  QETEGIKSENKSNEFKILDESY 77
           Q+ + ++ ENK  E K ++ESY
Sbjct: 73  QQKDKLQQENKDQELKNIEESY 94


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -3

Query: 142 HVSGVVWMTHISPLAAIYVDSGYDSSSILNSFDLFSLLIPSVSCTL 5
           H SG+ W+T  S   AI      +SS I+N     SLL  S  C+L
Sbjct: 405 HASGLSWLTRRSVFTAI-----LESSLIINPLHSTSLL-SSQPCSL 444


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 200 ICYIAEDFIGTVSVKI*WLSCFRSSLDDPHF 108
           ICY  E +   VS+     S  RS   DPHF
Sbjct: 21  ICYSLERYFEDVSLAYKLYSMLRSLKLDPHF 51


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 305 SLFTPSSWI*QPEAHVTVSRTPYSHIPRRSPVIDEI 198
           S+ TPS  + QP A   V   P  H P  +PV  E+
Sbjct: 508 SVITPS--VPQPPAAPVVPEAPSVHQPPAAPVAPEV 541


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 82  YLHKWQQVVKCGSSRLLRKHDNHQILTDTVPMKSSAI*QISSM 210
           Y+H  Q +  CG  R +R     + L   + + ++++  +SS+
Sbjct: 223 YIHNQQLIASCGEDRTIRIWKGKECL-QCITLPTTSVWSVSSL 264


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 244 RHTRTYPDALRSSMRFVILQRTSLAQCPSKFDGCHVSGVVWMTHIS 107
           RHT+TY +AL S +  +      +   P +     ++G+ +  H+S
Sbjct: 62  RHTKTYVEALESQLANMESTLAKIKVAPVEKIPSLLAGISFKDHLS 107


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 9   VQETEGIKSENKSNEFKILDESYPLST*MAASGEMWV-IQTTPE 137
           V+ET+ +  ENK NE  +  +S   S   +AS +    IQ  PE
Sbjct: 49  VKETDIVPDENKVNELDVHKQSTEFSKQESASNDDDTNIQLIPE 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,411
Number of Sequences: 5004
Number of extensions: 44225
Number of successful extensions: 95
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)