Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I18
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0299 - 27677571-27677846,27678009-27678503                       28   3.0  
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290...    28   3.9  
08_01_0100 - 714244-715461                                             28   3.9  
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761...    27   6.9  
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888...    27   6.9  
09_04_0445 - 17677126-17677512,17677608-17678564                       27   9.1  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    27   9.1  
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729...    27   9.1  

>02_05_0299 - 27677571-27677846,27678009-27678503
          Length = 256

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 94  IYVDSGYDSSSILNSFDLFSLLIPSVS 14
           +   SG DS ++L  FD+ SL IP++S
Sbjct: 105 VVASSGEDSGTVLVEFDVSSLYIPAMS 131


>12_02_1084 -
           25928373-25928426,25928551-25928652,25928913-25929039,
           25929292-25930730,25931430-25931447
          Length = 579

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 73  RTRYLHKWQQVVKCGSSRLLRKHDNHQILT---DTVPMKSSAI*QISSMTGERRGMCEYG 243
           R   + K +Q+      R   K++N+Q++     T+      +  ++ +T  R  +CE  
Sbjct: 316 RELLIEKEEQLSIMYEDRQKLKYENNQLVAIAGSTLMQHHEQVNLVNDLTNFREKVCEQE 375

Query: 244 VLLTVT*ASGCYIQEDGVKRLVALNVCYVACEGVPENI 357
           +L+  + +    ++    + L  +NVC     G+ +N+
Sbjct: 376 LLILESKSESNSMKSSLYEALQQINVCKQEIHGLTDNL 413


>08_01_0100 - 714244-715461
          Length = 405

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 411 VAVHKDVVYILPFCTHNLDVFRYSFARHVANVESDQSLYPI 289
           V VH    + LPF    LD+  ++   HVA V  + +L+ I
Sbjct: 309 VPVHVGPAHRLPFFDGTLDIVHWTSPEHVAGVMLEFALFDI 349


>07_03_1619 +
           28174991-28175804,28175945-28175968,28176075-28176170,
           28176285-28176466,28176623-28176836,28177262-28177499,
           28177709-28177865,28177950-28178246
          Length = 673

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 166 CPSKFDGCHVSGVVWMTHISPLAAIYVDSGYDSSSILNSF 47
           CPS  DG +     + ++++ LAA  +++  +  S   SF
Sbjct: 34  CPSTADGTYAPNSTYQSNLAALAAELIENSTEYGSAAGSF 73


>04_02_0031 +
           8874025-8874180,8882152-8882550,8882651-8882987,
           8883234-8884060
          Length = 572

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 338 KEYLKTSRLWVQNGRMYTTSLCTATLNSTC 427
           K+YL+  +   QNG+  T++LC   ++++C
Sbjct: 279 KKYLEQLKQKQQNGKSSTSALCKNVISASC 308


>09_04_0445 - 17677126-17677512,17677608-17678564
          Length = 447

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 258 NMSLXLLYPRGWGKETGRSQRLLR-GVRRST*KH 356
           N S+   YP+GW +  G  Q + R G  RS  +H
Sbjct: 346 NSSIMEFYPKGWRERAGGGQFVYRWGADRSGMRH 379


>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
            7139996-7140076,7140805-7140895,7141242-7141330,
            7141749-7141802,7141906-7142085,7142175-7142237,
            7142575-7142705,7142807-7142900,7143343-7143684,
            7143957-7144348,7145010-7148487,7149101-7149187,
            7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 367  GAKWKNVYDVLMYCDTKFDVFDYLG 441
            G K     D ++ CDT+ DVFD LG
Sbjct: 1838 GGKRGGRSDAIINCDTEKDVFDTLG 1862


>03_02_0306 +
           7290086-7290283,7290998-7291154,7291270-7291377,
           7291494-7291621,7291733-7291861,7291945-7292012,
           7292130-7292361
          Length = 339

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 219 ASGYVRVWRPTYGNMSLXLLYPRGWGKE 302
           ASG VRV  P   + SL LL    WG++
Sbjct: 28  ASGLVRVEHPAKSDGSLSLLVVGDWGRK 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,733
Number of Sequences: 37544
Number of extensions: 281097
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)