Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I17
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099914-9|AAC68759.2|  273|Caenorhabditis elegans Math (meprin-...    28   2.3  
AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    26   9.1  

>AF099914-9|AAC68759.2|  273|Caenorhabditis elegans Math
           (meprin-associated traf homology)domain containing
           protein 18 protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 188 GGSALITTCSKD*YPFSQWTTTTKYRTILMAI-GKVIQ 298
           G  A+   C+K+ Y   +W+  TKY   L+A+ GK +Q
Sbjct: 47  GMLAVYLYCNKEFYMHRKWSIQTKYTMKLVAVSGKYVQ 84


>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 227 YPFSQWTTTTKYRTILMAIGKVIQVLILISMVIYKASPINHVMSLAMIF 373
           YP S WT  T Y  I + I + ++  IL+        PI  V ++ + F
Sbjct: 159 YPLSVWTLRTLYSIIKLLIKENLKFSILLDACRLSFLPIILVWAVYIYF 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,218,444
Number of Sequences: 27780
Number of extensions: 112169
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)