Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I17
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 182 YLGGSALITTCSKD*YP-FSQWTTTTKYRTIL 274
           Y+GG+     CS D  P  +  T+T +Y  I+
Sbjct: 676 YIGGNPFNCNCSMDWLPGINNQTSTREYPRIM 707


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 12  ITFIDDHSDDAFLSFKT*SEQIRQIRIILEKKI*NSEEECKQSI 143
           +TF+D     AF+S +     I  I +++       +E+  QSI
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSI 238


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 154 VTEDSEMMDLPRW 192
           +TE +E  D PRW
Sbjct: 852 ITESAESEDGPRW 864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,798
Number of Sequences: 438
Number of extensions: 1525
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)