Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I14
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0963 + 29252961-29252999,29253108-29253179,29253295-292533...    28   3.1  
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    27   9.5  
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674...    27   9.5  
02_05_0953 - 33027007-33029079                                         27   9.5  
02_02_0351 + 9257204-9261388                                           27   9.5  

>03_05_0963 +
           29252961-29252999,29253108-29253179,29253295-29253369,
           29253500-29253583,29253676-29253745,29253842-29253933,
           29254082-29254123,29254241-29254627
          Length = 286

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 366 YQVNYSIITMNSFSGSTGRVSFPDISIVHV---IIQPVITIGH*NLVDIELKL 217
           + VNY ++T  S   S G    P+I   H+    IQ V+  GH   V   LKL
Sbjct: 121 FAVNYVLVTNLSNGASKGGWDIPEIYFHHIPEDFIQSVVKEGHMTCVAGGLKL 173


>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 84  MKKSLST-SEAFHAYVRNYSKCFKRVFFLKV 173
           +K  L+T  E F A  RNYS C K+   LK+
Sbjct: 188 LKARLNTFREEFRAVWRNYSSCGKKCLVLKL 218


>04_04_0867 +
           28865857-28866657,28866778-28867113,28867248-28867451,
           28867567-28867746
          Length = 506

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 382 FVQSIISSKL*HNNDEQF*RKHREGVISRHLYRSRNNPTC 263
           FV SII  K+   + EQ     +E ++SR L     +P C
Sbjct: 248 FVYSIIDRKIEQMSREQHEFAKKEDILSRFLLEREKDPGC 287


>02_05_0953 - 33027007-33029079
          Length = 690

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 227 SLNLLSGKLVLCFGT 183
           S N+++GK+VLC+GT
Sbjct: 318 SSNMVTGKIVLCYGT 332


>02_02_0351 + 9257204-9261388
          Length = 1394

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 184 VPKHNTNLPDNKFKLYVNQVLMSN 255
           +PK ++++PD+  KL  N+V MSN
Sbjct: 147 IPKSHSDVPDHVSKLTFNRVDMSN 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,465
Number of Sequences: 37544
Number of extensions: 196768
Number of successful extensions: 326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)