Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I13
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   2.6  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   4.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.5  
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    25   7.9  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   7.9  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 277  NYVAAFLLNRNLTVTVDRSPFRDGDNFLQSY*VQFS 384
            N  A  LLN N T +    P++  D FL+ + ++++
Sbjct: 1450 NTAAGNLLNPNATTSCSYCPYQTADQFLERFSMRYT 1485


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -3

Query: 203 NANVKFRAQMPRITRKSAYKH 141
           N  ++F+ Q+P ++R++ Y+H
Sbjct: 141 NLLIQFQIQVPNVSRRTVYRH 161


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 430 VIYLINFIDTLTNYYLFYSQ*QTLNITQLKKY 525
           +++L+NF D  T+Y LFY +    N    KKY
Sbjct: 233 ILHLMNFDDYSTSYELFYDR----NFPLAKKY 260


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 364 IEENCHRRGKEIYRQ--SPSNFYSVRKPLHSLLSSIYFNIQ*YPA*RDPVTRGFTIT 200
           +  N   R +E++ Q  +P+   S    + S +  +   +Q +P    P+T G+T+T
Sbjct: 149 VRRNERLRAEEVFGQIQNPTEIASSIMGVKSRVFDLAALVQSHPEANSPITTGYTLT 205


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 62  IALILRTLYAIHTLIFYGKIHLLSL 136
           + L+L TL+ I+T  FY  + L  L
Sbjct: 296 LVLVLLTLFCIYTAAFYRSVRLARL 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,880
Number of Sequences: 5004
Number of extensions: 37557
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)