Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I13
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    37   0.009
Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    27   9.5  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    27   9.5  

>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
            protein Y71F9AL.17 protein.
          Length = 1232

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = -2

Query: 363  LKKIVTVAERRSIDSHRQISIQ*ESRYIVC*AQFISIYSNTPLSATP 223
            ++K++T AE+ + D+H Q++    + ++VC  QF+ +Y   PL   P
Sbjct: 1150 IRKVLTAAEKDNTDAH-QLTYDEHNPFVVCSRQFVPLYRGRPLCKCP 1195


>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 209 HYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSHKVFLELKRLIKMI 48
           H N  +K R ++ ++ R+  Y H V TID    K  + V   VF +L    K+I
Sbjct: 398 HLNRQLK-RQKISKLEREKIYNHLVPTIDYSAMKNADVVIEAVFEDLPLKHKVI 450


>AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical
           protein T08B2.7c protein.
          Length = 697

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 209 HYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSHKVFLELKRLIKMI 48
           H N  VK R ++ ++ ++  Y H V TID    K  + V   VF +L+   K+I
Sbjct: 424 HLNKQVK-RRKINKLEKERIYNHLVPTIDYSAMKNADVVIEAVFEDLQLKHKVI 476


>AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical
           protein T08B2.7b protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 209 HYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSHKVFLELKRLIKMI 48
           H N  VK R ++ ++ ++  Y H V TID    K  + V   VF +L+   K+I
Sbjct: 398 HLNKQVK-RRKINKLEKERIYNHLVPTIDYSAMKNADVVIEAVFEDLQLKHKVI 450


>AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical
           protein T08B2.7a protein.
          Length = 781

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 209 HYNANVKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVSHKVFLELKRLIKMI 48
           H N  VK R ++ ++ ++  Y H V TID    K  + V   VF +L+   K+I
Sbjct: 424 HLNKQVK-RRKINKLEKERIYNHLVPTIDYSAMKNADVVIEAVFEDLQLKHKVI 476


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 318  HRQISIQ*ESRYIVC*AQFISIYSNTPLSATPLRAVSL 205
            H  +S   +++  +C +  +S++S  PLSA   RAV L
Sbjct: 1836 HSCVSAVLQTQLRLCWSSLLSLFSEAPLSALSARAVFL 1873


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 318  HRQISIQ*ESRYIVC*AQFISIYSNTPLSATPLRAVSL 205
            H  +S   +++  +C +  +S++S  PLSA   RAV L
Sbjct: 1836 HSCVSAVLQTQLRLCWSSLLSLFSEAPLSALSARAVFL 1873


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,101
Number of Sequences: 27780
Number of extensions: 201027
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)