Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I13
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   3.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   3.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   6.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 556 VIFIFDRILIYIF*VELYLGSVI 488
           V  + DRI ++IF V   LG+V+
Sbjct: 542 VAMVLDRIFLWIFTVACVLGTVL 564


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 6   RGLNIRQNLIQKNTNHFN 59
           +GLNI  N+I+ N + +N
Sbjct: 357 KGLNILGNIIEGNADSYN 374


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 6   RGLNIRQNLIQKNTNHFN 59
           +GLNI  N+I+ N + +N
Sbjct: 357 KGLNILGNIIEGNADSYN 374


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 298 LNRNLTVTVDRSPFR 342
           L +N  VT+D +PFR
Sbjct: 96  LVKNAIVTIDATPFR 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,164
Number of Sequences: 438
Number of extensions: 2763
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)