Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I12
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    27   1.6  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   3.8  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    26   5.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   5.0  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   6.6  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   6.6  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   6.6  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.6  
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    25   8.7  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   8.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.7  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   8.7  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 258 FATGFSLGKDVKWTT--SCPACSNLVTTPWPSML*LFDGIGNTTRILRASLETTSIHRAK 85
           FAT  S+ +D+ +    +CP    LV T         + + +T  I + +LE   +H+ K
Sbjct: 119 FATNASIVRDLAFAAGETCPEAKYLVVT---------NPVNSTVPIFKKALERVGVHQPK 169

Query: 84  HI 79
           H+
Sbjct: 170 HL 171


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 431 IELLSDPKETFDAVVLEWFFSEINA 505
           I+ L  P   FD ++L+  FSEI++
Sbjct: 96  IDALEHPNNFFDVIILQTVFSEISS 120


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 170 LGQGVVTRLLQAGHEVV 220
           +G  +V +LL+AGHEVV
Sbjct: 12  IGSEIVRQLLEAGHEVV 28


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 25   NSEGKFSKWC*DEAKESNNMFGSVDACRFE 114
            N   KF +W  D A E N    S   CR+E
Sbjct: 1499 NDSDKFVRWLDDNAAEVNQFMLSCFFCRWE 1528


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 151 WYRKYDKDSQSFARNDKHPQSQTYCLILWPHLNTTLKIF-LQSFK 20
           W R   ++     R D +  +Q YC++   H  T L+ F L+S++
Sbjct: 235 WDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSGTDLEHFELRSWR 279


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
 Frame = -1

Query: 61  HLNTTLKIFLQSFKN-NKTL 5
           H+ TTL I++QSF+N N+T+
Sbjct: 480 HVETTLYIYVQSFQNANQTV 499


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 537 INGHFKRCGIPAF 499
           I GHF+R GIP F
Sbjct: 86  IEGHFRRVGIPCF 98


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 306  NQNKWIRSS*KI*SAKETWQIQFFSSTSLTKC 401
            N  +W+ S      +K    I+FFS T+L +C
Sbjct: 1119 NWRRWLESDEGWRKSKANTDIKFFSETTLDQC 1150


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 162 IAYLAKALLQGYCKRDMR*STLHLSREKNQWQI 260
           I+ +  A L  Y  RD+  +   L REK++W++
Sbjct: 44  ISRIQSATLPEYQIRDLNDAINRLMREKHEWEV 76


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 555 SVEPNHINGHFKRCGIPAFISEKNHSNTTASNVSLGSLS 439
           S+ P    G     G    +S  + SNT +S  SLGSLS
Sbjct: 17  SISPTAPPGDVGTPGSLLSLSSSSSSNTDSSGSSLGSLS 55


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 356 NMADSVFFLYFTYEMHR 406
           NM + VF++Y+T + HR
Sbjct: 75  NMLEQVFYMYYTDKRHR 91


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 279 DTSISVKFATGFSLGKDVKWTTSCPACSNLVTTPWPSML*LFD--GIGN 139
           D S+  ++    ++GK  +W+    +C +L    WP +L  F   G+GN
Sbjct: 314 DKSLHSRYIAEMNVGKRWQWSDLLKSCLDL--RVWPFILMYFGIVGVGN 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,231
Number of Sequences: 5004
Number of extensions: 57056
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)