Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I12
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0531 - 3892738-3892757,3893083-3893111,3893330-3893355,389... 33 0.24
01_01_0530 - 3877337-3877396,3877709-3877837,3877954-3878221,387... 32 0.42
06_03_0784 - 24557089-24557198,24557296-24560725 30 1.7
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 30 1.7
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 29 2.9
05_01_0527 - 4541922-4541987,4543996-4544130,4544674-4544941,454... 29 2.9
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 27 8.9
>01_01_0531 -
3892738-3892757,3893083-3893111,3893330-3893355,
3893639-3893767,3893884-3894151,3894355-3894694,
3894925-3895045,3895135-3895230,3895604-3895777,
3895902-3896068,3896675-3896840,3896915-3897053,
3897135-3897327,3897442-3897524,3897850-3897881
Length = 660
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 494 EINAGIPHLLKCPLIWLGSTEAHWQVLRIIDEIPNPAY 607
++ +G+P L PL W S+ HW V + + +P PAY
Sbjct: 233 DVPSGVPRRLFSPLPWESSSLQHWTVAKDLFSVP-PAY 269
>01_01_0530 -
3877337-3877396,3877709-3877837,3877954-3878221,
3878385-3878776,3879003-3879119,3879209-3879304,
3879775-3879948,3880077-3880243,3880800-3880965,
3881040-3881178,3881767-3881901,3882157-3882161
Length = 615
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 494 EINAGIPHLLKCPLIWLGSTEAHWQVLRIIDEIPNPAY 607
++ +G+P L PL W S+ HW + + + +P PAY
Sbjct: 177 DVPSGVPRRLFSPLPWESSSLHHWTIAKDLFSVP-PAY 213
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 486 NHSNTTASNVSLGSLSNSITLSCCKNCLCIS*VK*RKKTESAMFPLPIKFFSLNVSICSD 307
N + TT + V + S ++L +N +S ++ + + P + FFSL V I D
Sbjct: 1024 NGNLTTLTKVLIESCYGLVSLRSLRNLSFLSKLEIKHCLKLVALPEMVNFFSLRVMIIQD 1083
Query: 306 C-FLNTFPIDDTSISVKF 256
C L P D +++ F
Sbjct: 1084 CPELVCLPEDGLPMTLNF 1101
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 131 LVVFPIPSKSHSILGQGVVTRLLQAGHEVVHFTSFPREKPVANLTEIDV 277
L+ F I S +I+G +V R+ A V+HF+ E+P L +++V
Sbjct: 426 LLDFVIKSLGDTIVGNYIVRRVPDAETRVLHFSLEEYEEPTPALLDVEV 474
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = -1
Query: 250 WFFSRERCKVDYLMSR-LQ*PCNNALAKYAMTF*WYRKYDKDSQSFARN---DKHPQSQT 83
W+ ++C+ DY+++R + A KY + Y+ D F+R+ +H Q
Sbjct: 424 WYIVGKKCEEDYIVARSAEEALAKAQEKYGKSVEIYQDPDVLDTWFSRSINTFRHKSLQL 483
Query: 82 YCLILWP 62
C LWP
Sbjct: 484 SCSALWP 490
>05_01_0527 -
4541922-4541987,4543996-4544130,4544674-4544941,
4545429-4545751,4546096-4546212,4546309-4546422,
4546613-4546786,4546848-4546999,4547133-4547298,
4547387-4547525,4547622-4547814,4548084-4548166,
4548250-4548365,4548878-4548947,4549151-4549272
Length = 745
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 491 SEINAGIPHLLKCPLIWLGSTEAHWQVLRII 583
S+I +G+P L PL W + HW V +++
Sbjct: 307 SKIPSGVPRRLFTPLPWEPKSLQHWTVAKVV 337
>01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 61 EAKESNNMFGSV--DACRFERSSENPCRISYTI 153
EA N G++ DAC ERS E PC + + +
Sbjct: 989 EAYLQGNGVGTLTDDACTTERSKEQPCSVGFKL 1021
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,296,287
Number of Sequences: 37544
Number of extensions: 325514
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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