Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I11
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   1.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.8  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 194 ETKHVLSLAAVAQDLQINNTVLTSTFGSSMQE-ETTMDYSAESMKLRAENERLHYELALA 370
           E + + ++     ++  + TVL      S  E +T   Y+  S  LR+ + R     +  
Sbjct: 172 EREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRS-RSFQRTSSC 230

Query: 371 HSRVRDL 391
           HSR  DL
Sbjct: 231 HSRYEDL 237


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 163 HHHAHPLATP 134
           HHH HP  TP
Sbjct: 464 HHHPHPPETP 473



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -1

Query: 220 GQRQHVLGLVRVPTRRVQRHHHAHPLATP 134
           G   H +G           HHH+H  ATP
Sbjct: 413 GPHHHTMGHGHSHIHATPHHHHSH-AATP 440


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 116 GQG*AGRSGEGVSMVVTLNPASRYANETKHVLSLAAVAQDLQI 244
           G+G A R G   S  V L+P +  A E    ++     +DL I
Sbjct: 423 GEGLADRRGSESSDSVLLSPEASKATEAVEFIAEHLRNEDLYI 465


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 221 AVAQDLQINNTVLTSTFGSSMQEETTMDYSAESMKL 328
           A+A+D++++   L +   ++    TT+ ++  SM L
Sbjct: 169 AIAEDMKLSQFDLVANPTANYSASTTLSHAEYSMLL 204


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 426 DILWRQSSTEAV 391
           DILW Q+S +A+
Sbjct: 297 DILWTQASAKAI 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,453
Number of Sequences: 438
Number of extensions: 2080
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)