Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I10
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    28   0.90 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   2.1  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   2.7  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   6.3  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.4  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   8.4  

>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 233 DAVQKLPFCNPSNAKDSPVYNDLVIVSTLDGRLTAFSTQNGAKAWDLET 379
           D V +LP      A+ S +YN   IV+T+DG L ++    G + W L T
Sbjct: 64  DGVLELPSAENVFAESS-LYNAF-IVATVDGSLHSYDRITGQELWSLFT 110


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 312 LTITKSL*TGESLALDGLQNGNFCTASSARR 220
           L + +S  TGESLA+D  QN    ++S+ +R
Sbjct: 309 LQVDQSAITGESLAVDKHQNDTMYSSSTVKR 339


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 293 NDLVIVSTLDGRLTAFSTQNGAKAWDLETQPL--LSSNLHHVE 415
           ND++  S +  +  A   + G  ++DLE Q L   +SNLH +E
Sbjct: 127 NDILYHSEISAKKNASPMEFGDASFDLEKQRLHFANSNLHSIE 169


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 528 DNSCSVSKGKGSIVSPLRL*SVPRREGTSRTHLPPDV 418
           DN+ S +       SPLRL   PRR G  R + P  +
Sbjct: 78  DNNISTTTLAPPSPSPLRLNEAPRRRGRPRKYPPKPI 114


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = -1

Query: 576 SRAPGTTKSSEYLKDDDNSCSVSKGKGSIVSPLRL*SVPRREGTSRTHLPPDVSST 409
           S  P TTKS E +       S ++G  S V+P    S P +   S    PP VS+T
Sbjct: 182 SSTPSTTKSKEKIFSPKALSSPTQGASSNVTPE---SPPEKPIPSFVLSPPPVSAT 234


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 228 ARRLQTKKVSANAAFKAITLQNQSDIL 148
           ARRL+    S + A   I  QN SDIL
Sbjct: 577 ARRLRVNSSSVSEAIGGIVSQNASDIL 603


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 173 PSKTNPTFYYSKTKFGHLNTYNIVVYLYY 87
           P ++ P F +    FG +  Y IV+Y  Y
Sbjct: 46  PFRSAPPFLFKSAAFGAIVAYAIVLYKTY 74


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 597 SKPNHNVSRAPGTTKSSEYLKDDDNSCS-VSKGKGSIVS 484
           S P H  S  P     S YL+ + +S S V  GK SI S
Sbjct: 577 SSPRHFSSHTPVNVDKSSYLEMNGHSLSTVISGKESISS 615


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 287 VYNDLVIVSTLDGRLTAFSTQNGAKAWDLETQPLLSS 397
           V + L  +  LD     F + NGA+   LE  P+LS+
Sbjct: 307 VIDYLKTIGELDNTFVIFMSDNGAEGSVLEAIPVLST 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,768
Number of Sequences: 5004
Number of extensions: 54770
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)