Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I10
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0586 - 4334896-4335177,4336340-4338007                           31   0.92 
02_05_1021 + 33565866-33567431,33568317-33568604                       30   1.6  
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106...    29   3.7  
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    28   4.9  

>02_01_0586 - 4334896-4335177,4336340-4338007
          Length = 649

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 302 VIVSTLDGRLTAFSTQNGAKAWDLETQPLLSSNLHHVELTSGGKWV 439
           ++V +LDG++  +S  +   A      P L S + HV++T  GKW+
Sbjct: 450 IVVGSLDGKVRLYSKSSMRMA--KTAFPGLGSPITHVDVTYDGKWI 493


>02_05_1021 + 33565866-33567431,33568317-33568604
          Length = 617

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 302 VIVSTLDGRLTAFSTQNGAKAWDLETQPLLSSNLHHVELTSGGKWV 439
           ++V ++DG++  +S  +   A      P L S + HV++T  GKW+
Sbjct: 416 IVVGSVDGKIRLYSKSSMRMA--KTAFPGLGSPITHVDVTYDGKWI 459


>01_05_0006 +
           17008799-17009417,17010035-17010162,17010425-17010650,
           17010792-17010925,17010988-17011161,17011234-17012238
          Length = 761

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 353 GAKAWDLETQPLLSSNLHHVELTSGGKWVRLVPSLRGTLYSLSGDTI 493
           GAK  DL    LLS    H+ +  G  W   +P L    + ++ D I
Sbjct: 423 GAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLPPLEENDFKVASDQI 469


>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 509  DTEQLLSSSFKYSDDLVVPGARETL 583
            DT+ L+S+SF   DDL +P + E L
Sbjct: 1572 DTQNLVSNSFLLDDDLCIPFSTEDL 1596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,543,974
Number of Sequences: 37544
Number of extensions: 342421
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)