Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I08
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 67 1e-12
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 28 0.76
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 1.8
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 27 2.3
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo... 26 4.1
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 26 4.1
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 4.1
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.4
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 67.3 bits (157), Expect = 1e-12
Identities = 30/62 (48%), Positives = 47/62 (75%)
Frame = +1
Query: 274 KKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQ 453
+KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P V+K+ ++ YIV G+ +ED++
Sbjct: 25 EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83
Query: 454 QA 459
QA
Sbjct: 84 QA 85
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 28.3 bits (60), Expect = 0.76
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = +1
Query: 82 ELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQ 261
E ++ + + K EE T+P P AGG AG + S A++
Sbjct: 35 EAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAGG----AAGAEATSAAEE 90
Query: 262 SRGEKKARKIMSKLGLKL 315
++ E+ A + +G L
Sbjct: 91 AKEEEAAEESDEDMGFGL 108
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 435 LRLSKYYVSVRVWVLEDIRIVDHKEYVL*FPYCNSVYTLYKLEAKFAHD 289
LR+S YY S ++ ++ D YVL FP+ N+ Y+ E K +D
Sbjct: 255 LRMSLYYDSNELFK----KMTDDLNYVLKFPFDNTRGNEYEKEQKIRND 299
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/85 (23%), Positives = 37/85 (43%)
Frame = +1
Query: 67 NPNMPELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIV 246
+P P EL+ +T+ K E ++ + + E G+ +S+ IA +D
Sbjct: 231 SPQSPVKRELNDSTSP--SKLSESSSSLTGSSSALLSQSEFLGS--VPSLSDSIATVDPF 286
Query: 247 SKAKQSRGEKKARKIMSKLGLKLVQ 321
+ ++KAR ++ LKL Q
Sbjct: 287 FSFESFETDEKARSLLMDASLKLPQ 311
>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 246
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 211 PLPQVRLHLQVPGWCHLNHCLRKQSLPYV 125
P P ++ + PG C + C +++ PYV
Sbjct: 134 PFPHSKIIIVSPGICTKDICFKREQEPYV 162
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 163 LNHCLRKQSLPYVSPSLMQWLYRVLLVQACLDFL*QSDNS 44
+ LR+ S Y+ + + W+Y+ L+ AC SD++
Sbjct: 414 IQQSLREMSATYILNNEINWIYQEALLYACCSVDAASDDT 453
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 61 TKNPNMPELTELDKATASMTEKRKEETAXXXXXXXXTIPELED 189
TK+ MP T+L +MT+ EE P+LED
Sbjct: 336 TKDACMPNYTKLKAYERNMTDASPEEKQQFRIKLLNQFPKLED 378
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 151 LRKQSLPYVSPSLMQWLYRVLLVQACLDFL 62
L + S P V L ++ RVLLVQ+ FL
Sbjct: 253 LSRTSSPVVEKKLKRYYIRVLLVQSITFFL 282
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 244 VSKAK-QSRGEKKARKIMSKLGLKLVQGVNRVTI 342
++KA+ + R EK+ R+IMS+ KL++G + +I
Sbjct: 1233 IAKAENEERFEKEKRRIMSEDRDKLIRGRQKTSI 1266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,882
Number of Sequences: 5004
Number of extensions: 41519
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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