Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I07
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   1.2  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    25   2.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   2.8  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.7  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    24   4.8  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    24   4.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   8.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    23   8.5  

>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 311 LSPYTVLHFSKFHWHINQLSTYPRSTNGTLVLCIK 207
           L+ Y V+ F  F     +++ Y ++ +GT + C+K
Sbjct: 438 LTKYKVIEFQPFDPVSKKVTAYVQAPDGTRITCVK 472


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 254 STYPRSTNGTLVLCI 210
           ST P STNGTL  C+
Sbjct: 32  STKPASTNGTLSFCL 46


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 295 YSIFPSSIGTLTNYPHILEVLTGRWFSVSSLLQLPR*APTFIS 167
           YS+  SS+ ++ +  +I    +G    VS+LL  P  + TF++
Sbjct: 387 YSVVQSSLASIISNAYIATSKSGLNSGVSTLLASPTSSSTFVT 429


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 149 LYKSIN*YKCRCLARKL 199
           L ++IN   CRCLA+KL
Sbjct: 7   LNRNINALNCRCLAQKL 23


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = +1

Query: 247  YVDNWLMCQWNLEKWSTVY 303
            ++D+W++C   L +W  ++
Sbjct: 2595 WLDHWILCAQKLNQWDVLF 2613



 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 244  GYVDNWLMCQWNLEKWST 297
            G  + +L C W L  WST
Sbjct: 2620 GCAELYLECAWRLSDWST 2637


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 253 PHILEVLTGRWFSVSSLLQLPR*APTFISINRLI--QFQLST 134
           PH   +L  +W  + +  + P  AP F SI + +  +F L T
Sbjct: 515 PHSASLLEQKWIQIIAYERGPEMAPLFTSIVKYLNGRFALQT 556


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 84  LSTVFSKIKTNYHEE 40
           LS++  KI+ NYHEE
Sbjct: 74  LSSIPEKIRANYHEE 88


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 253  DNWLMCQWNLEKWSTV 300
            D W+MC   L++W  +
Sbjct: 2657 DQWVMCAQKLQQWDVL 2672


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 21   RVCYESTLHDNSS*FLRKRYLSLL 92
            R+C E++ +++S  +LRK  L L+
Sbjct: 1181 RICEEASRNEHSDQYLRKLLLKLI 1204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,954
Number of Sequences: 5004
Number of extensions: 24441
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)