Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I07
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0421 - 22756903-22757384,22757585-22758047                       26   5.6  
02_04_0152 + 20246665-20246684,20246955-20247011,20247152-20247578     26   5.6  
11_06_0168 + 20868696-20870072                                         26   7.4  
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004...    26   7.4  
03_05_0522 - 25161595-25162285,25162394-25163139                       26   7.4  
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240...    25   9.7  

>02_04_0421 - 22756903-22757384,22757585-22758047
          Length = 314

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -2

Query: 292 SIFPSSIGTLTNYPHI---LEVLTG 227
           S FPS +G LT YPH+   ++VL G
Sbjct: 162 SRFPSRMGFLTPYPHVRYHMDVLGG 186


>02_04_0152 + 20246665-20246684,20246955-20247011,20247152-20247578
          Length = 167

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 175 FISINRLIQFQLSTHLHLHQVIAD 104
           FIS NR  Q Q  T  ++HQ++ D
Sbjct: 111 FISANREAQLQEKTKTNMHQLVID 134


>11_06_0168 + 20868696-20870072
          Length = 458

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 250 HILEVLTGRWFSVSSLLQLPR*APTFISINRLIQFQLSTH 131
           HIL  +TG   ++ S++ + +  P F     L +++ S H
Sbjct: 158 HILNTITGEQIALPSVITINQVTPIFNRKGELCKYRYSRH 197


>04_04_0824 -
           28399144-28399385,28400193-28400312,28400422-28400453,
           28400531-28400625,28400713-28400786,28400883-28401018,
           28401096-28401333,28401508-28401555,28401593-28401780,
           28401862-28401983,28402061-28402226,28402321-28402443,
           28403068-28403139,28403244-28403351,28404212-28404328,
           28404458-28404596,28404702-28404808,28404904-28405013,
           28405141-28405274,28405348-28405497,28405571-28405791,
           28405868-28406677,28410261-28410473
          Length = 1254

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 135 VDNWNCISLLIDINVGA*RGSCNKL 209
           V+NW CI+   ++   A RG C++L
Sbjct: 735 VNNWACINFSRNVQDSAARGFCHEL 759


>03_05_0522 - 25161595-25162285,25162394-25163139
          Length = 478

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 252 HISSKY*RDAGSLYQAYYNFLARHRHLYQ 166
           H+ S   +  G+LY  +Y   A H H+ Q
Sbjct: 425 HLKSSKLQCLGNLYPKHYEHFAEHEHICQ 453


>05_03_0242 +
           10823312-10823342,10823662-10823732,10824010-10824021,
           10827329-10827394,10827564-10827766,10827977-10828266,
           10828377-10828468,10829876-10830344,10830670-10830978,
           10831290-10831364,10831457-10831614
          Length = 591

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 286 FPSSIGTLTNYPHI 245
           FPS +G LT YPH+
Sbjct: 549 FPSRMGFLTPYPHV 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,992,264
Number of Sequences: 37544
Number of extensions: 135594
Number of successful extensions: 273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)