Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I07
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome al...    32   0.078
Z82055-9|CAL44965.1|  210|Caenorhabditis elegans Hypothetical pr...    26   5.1  
AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical ...    26   5.1  
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    26   6.8  
Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z19157-5|CAE18055.2|  177|Caenorhabditis elegans Hypothetical pr...    25   8.9  
AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical ...    25   8.9  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    25   8.9  

>AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome alpha
           subunit protein 6 protein.
          Length = 260

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = -1

Query: 308 SPYTVLHFSKFHWHINQLSTYPRSTNG 228
           SP+++L  ++   H+NQ+ST+PR+T G
Sbjct: 219 SPFSLLEDAQVAVHLNQVSTHPRTTGG 245


>Z82055-9|CAL44965.1|  210|Caenorhabditis elegans Hypothetical
           protein T26H2.10 protein.
          Length = 210

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 225 AGSLYQAYYNFLARHRHLYQLIDLYNSNYRLI 130
           A ++  + +N L    H Y+L DL N N RLI
Sbjct: 76  ARTILCSQFNILRLSVHFYELDDLLNFNSRLI 107


>AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical
           protein Y17G7B.1 protein.
          Length = 115

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 235 VLRGYVDNWLMCQWNLEKWSTVY 303
           +++ Y  N + C+WN E WS  Y
Sbjct: 93  MIKKYGRNIVRCKWNSEVWSVDY 115


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 272 WHINQLSTYPRST 234
           WH+NQLST+  +T
Sbjct: 51  WHVNQLSTFKNTT 63


>Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 219 NQRPVSTSRICG*LVNVPMELGKMEYGV 302
           N RPV  SR+C  + +V  +  K +Y +
Sbjct: 292 NNRPVEYSRVCSVINDVYKQFNKKQYPI 319


>Z19157-5|CAE18055.2|  177|Caenorhabditis elegans Hypothetical
           protein ZC84.7 protein.
          Length = 177

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +1

Query: 196 VVISLIQRTSVPLVLRGYVDNWLM 267
           + +S++ + S+PL+L  Y+ +W++
Sbjct: 44  IFLSIVSKRSIPLLLIPYILSWVL 67


>AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 219 NQRPVSTSRICG*LVNVPMELGKMEYGV 302
           N RPV  SR+C  + +V  +  K +Y +
Sbjct: 292 NNRPVEYSRVCSVINDVYKQFNKKQYPI 319


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
            protein K10E9.1 protein.
          Length = 1451

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 317  ISLSPYTVLHFSKFHWHINQLSTYPRSTNGTLVLCIKLITTS 192
            IS +  + L   +FH ++  ++     T G    CI ++ TS
Sbjct: 904  ISTNEKSFLQHLRFHLYLKMMNISKSMTQGEYATCIMMLLTS 945


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,184,656
Number of Sequences: 27780
Number of extensions: 125392
Number of successful extensions: 254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)