Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I07
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   2.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   2.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   3.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   6.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    20   6.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   8.3  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 213 YQAYYNFLARHRHLYQLIDLYNSNYRLIY 127
           Y  Y N+   + +     + YN+NY+ +Y
Sbjct: 324 YSNYNNYNNNYNNYNNYNNNYNNNYKKLY 352


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 69  SKIKTNYHEE 40
           SK+ +NYHEE
Sbjct: 481 SKVTSNYHEE 490


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 4   CRNSARGFVMNLLF 45
           C NSA GFV N L+
Sbjct: 413 CENSAWGFVGNSLW 426


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 220 TSVPLVLRGYVDNWLMCQ 273
           TSV L+  G+ DN++  Q
Sbjct: 300 TSVRLISSGFFDNFVTVQ 317


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 204 YYNFLARHRHLYQLIDLYNSNYRLIYIFTK**RIKKV*ED 85
           Y+N L R R     +D    + R  Y F+K  ++KK  E+
Sbjct: 26  YFNSLVRFRRFTIELDKVLESPRGKYEFSKYDKLKKKLEE 65


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 148 FQLSTHLHLHQVI 110
           +Q   HLH HQV+
Sbjct: 70  YQSHHHLHHHQVL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,403
Number of Sequences: 438
Number of extensions: 1741
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)