Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I05
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 172 3e-44
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 172 3e-44
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 31 0.089
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 28 0.83
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.1
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.5
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 2.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 4.4
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 5.9
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 25 7.7
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 7.7
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 7.7
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 25 7.7
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 172 bits (418), Expect = 3e-44
Identities = 83/123 (67%), Positives = 93/123 (75%)
Frame = +1
Query: 199 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 378
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 379 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 558
TG VYNVT ++GV++ K V R + KR+N+RIEHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 559 AAG 567
A G
Sbjct: 121 AQG 123
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 172 bits (418), Expect = 3e-44
Identities = 83/123 (67%), Positives = 93/123 (75%)
Frame = +1
Query: 199 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 378
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 379 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 558
TG VYNVT ++GV++ K V R + KR+N+RIEHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 559 AAG 567
A G
Sbjct: 121 AQG 123
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 31.5 bits (68), Expect = 0.089
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 253 IFGRTSPWYHDDNPWSLSYFSLQKYQWY 170
I G+ S WYHDD W++ Y L K++W+
Sbjct: 200 IGGKKSSWYHDD-IWNMKY--LPKFKWH 224
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 28.3 bits (60), Expect = 0.83
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 223 DDNPWSLSYFSLQKYQWYAIP-LPQNTWTKFV*P*YKIYKNCMVYYHKYN**KSRQYTKS 47
DD P L++FSL YQ + L QN +F +HKY+ K++QY+ +
Sbjct: 207 DDVPGFLTHFSLSNYQQHLYQVLTQNVSLRFC-------SRLQCSFHKYD-EKTKQYSLA 258
Query: 46 SVLY 35
S Y
Sbjct: 259 STTY 262
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 311 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 195
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 411 SRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 548
+R+ R + R+ PT + P + + V LPQ+ ++K VE
Sbjct: 543 ARKSRARGPVRRPPTSVNTKPSFSVSGIDVFLNLPQSSVMKKKGVE 588
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 210 GVCHILACKNTNGMQFLCLKTRGPNLYNRNIRYTKIVWYIITSTINRSLGNTQRVQSS 37
G C + ++T+ + LC RG L++ ++ + W +I R+ RVQ S
Sbjct: 371 GFCIVTFTQHTSAVSGLCFSKRGNVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFS 428
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 549 LQQPFVLLDALEEVLPALGVLHVL 478
L+ PF+LL + E+LP + VL
Sbjct: 1708 LENPFILLSEVSEILPETPIQEVL 1731
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 104 LYGILSQVQLIEVSAIHKEFSPLFLNNY*TIFP 6
L+ +LS+ V IHK P+F N+ T FP
Sbjct: 273 LFHLLSRCGKHAVQNIHKILLPIFQKNFLTGFP 305
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 117 RYTKIVWYIITSTINRSLGNTQRVQSSIFEQLLNY 13
+Y K WY + NRSL N + + + +LL Y
Sbjct: 279 QYPKRDWYSFVNRDNRSLANDEAI--DLLNRLLRY 311
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 342 TKGYATQSIPR*DRACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQA 521
TK +SIP + Q R S ++ + +Q + HQ P ++++Q P+A
Sbjct: 768 TKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQ--STQHQQPVEVQKSIQSDVSAPKA 825
Query: 522 RQGERKAV 545
++ K V
Sbjct: 826 KEVSEKPV 833
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/65 (21%), Positives = 26/65 (40%)
Frame = -3
Query: 419 TPRACAVTL*TRPVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLRAN 240
TP C + R + W+ FC + S + + +Y S ++ ++ +
Sbjct: 210 TPEFCQIC--EREIQSWFFELHSKFCLSTSTYESVVQAAQDSLLYFRSTLLEIQEGMQKD 267
Query: 239 KSLVP 225
SLVP
Sbjct: 268 SSLVP 272
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 244 RTSP--W-YHDDNPWSLSYFSLQKYQWYAIPLPQNTWTK 137
RT P W + D PW ++ F +++++ +P+P W K
Sbjct: 191 RTQPKNWAWACDGPWDMASFLAKQFKYDKMPIPD--WIK 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,450
Number of Sequences: 5004
Number of extensions: 56617
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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