Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I05
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 150 7e-37
03_01_0290 + 2246791-2247027,2248089-2248346 150 7e-37
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 29 2.0
02_05_0294 + 27609656-27611305 29 2.0
02_03_0131 - 15576422-15577021 29 3.4
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.4
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 28 4.5
01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078 28 4.5
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 28 6.0
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 7.9
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 27 7.9
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 150 bits (364), Expect = 7e-37
Identities = 68/123 (55%), Positives = 92/123 (74%)
Frame = +1
Query: 199 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 378
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 379 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 558
TGRV+NVT A+GV +NK+V RI+ KRI++R+EHV+ S+C ++F R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 559 AAG 567
A G
Sbjct: 121 ARG 123
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 150 bits (364), Expect = 7e-37
Identities = 68/123 (55%), Positives = 91/123 (73%)
Frame = +1
Query: 199 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 378
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 379 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 558
TGRV+NVT A+GV +NK+V RI+ KRI++R+EHV+ S+C ++ R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 559 AAG 567
A G
Sbjct: 121 ARG 123
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 183 NTNGMQFLCLKTRGPNLYNRNIRYTKIV--WYIITSTINRSLGNTQRVQSSI 34
NTNG QF TR P+L +++ + +++ ++ S + +G R S +
Sbjct: 175 NTNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTSDV 226
>02_05_0294 + 27609656-27611305
Length = 549
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 291 HVRGKWNSSMCAESSGEQVPGTTTITLGVCHILACKNTNGMQFLCLKTRGPNLYNRNIR 115
HVRG W + A+ + + + LG C + C T G L R + + N+R
Sbjct: 407 HVRGAWATMFTADPAIVALTASVLPILGACELGNCPQTTGCGVLRGSARPKDAASINLR 465
>02_03_0131 - 15576422-15577021
Length = 199
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 399 DRTRSRRDREQAR-PRQDPTE---THQHPHRAREALQVQAGLPQARQ 527
+R R RDR+++R P D + +H H HR R + AG + R+
Sbjct: 54 ERRRGERDRKRSRSPSADRSHRRHSHSHSHRGRSSPSPDAGRHKRRR 100
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 298 YKVGDIVDIRGNGAVQKGMPHKVY 369
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Frame = +3
Query: 348 GYATQSIPR*DRACLQCDRTRSR--------RDREQARPRQDPTETHQHPHR-----ARE 488
G A + P R+ +C T SR R A + PT + P R ARE
Sbjct: 106 GGAAHTPPGSGRSLSRCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPPPREAAMAARE 165
Query: 489 ALQVQAGLPQARQGERKAVEG 551
++QA L ++R G R+A++G
Sbjct: 166 RRRIQARLNRSRSGARRALKG 186
>01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078
Length = 514
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 339 SAIAPNVNDVSHFVHFHVRGKWNSSMCAESSGEQVPGTTTITLGVCHIL 193
+A A +SH++ H R W + A + + GT T G+ H+L
Sbjct: 38 TAAATTPQRISHYLAHHPRATWEALSAAFPAADHDSGTAATTRGL-HLL 85
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 374 PWYTLCGIPFCTAPLPLMSTM 312
P T CGI F TA LPL+ M
Sbjct: 430 PNVTTCGIQFATAQLPLLQLM 450
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 349 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKC 501
G P G T VY+V AH+ GVIV+ + I ++ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 484 VKHSKCRQDFLKRVKENERLLKEAKA 561
++ +KCRQD++ VK++ +L+++ A
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,823
Number of Sequences: 37544
Number of extensions: 366330
Number of successful extensions: 1099
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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