Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I05
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   182   1e-46
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    32   0.25 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    32   0.25 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    32   0.25 
Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z69788-8|CAA93644.3|  483|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine rece...    28   4.1  
AF016684-4|AAB66208.1|  159|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z68005-4|CAA91992.2|  430|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U64598-3|AAK39213.1|  432|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  182 bits (444), Expect = 1e-46
 Identities = 86/123 (69%), Positives = 97/123 (78%)
 Frame = +1

Query: 199 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 378
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 379 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 558
           TGR++NVT  A+G+IVNKRVRG ILPKRINIRIEH+K SKCR DFL RVK N+   K AK
Sbjct: 61  TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120

Query: 559 AAG 567
           +AG
Sbjct: 121 SAG 123


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 383 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 246
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 383 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 246
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 383 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 246
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 399 DRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 548
           DR+  RR R++  PR+ P E    P R R A   +   P+ ++G R++ E
Sbjct: 300 DRSEQRRHRDEPPPRRAPQE---QPSRRRGASPPEP--PRRQEGARRSEE 344


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 399 DRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 548
           DR+  RR R++  PR+ P E    P R R A   +   P+ ++G R++ E
Sbjct: 408 DRSEQRRHRDEPPPRRAPQE---QPSRRRGASPPEP--PRRQEGARRSEE 452


>Z69788-8|CAA93644.3|  483|Caenorhabditis elegans Hypothetical
           protein F09A5.1 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 405 CGHIVNTPCLTVVYFVWHT 349
           CG +++TPCL VV+   H+
Sbjct: 320 CGALISTPCLVVVFVFGHS 338


>U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein48 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 73  INCTCDNIPYNFCISYITVIQIWSTCFEAEELHTIGIF 186
           + CT  ++  NF +  + ++ +W+  FE   L  +GI+
Sbjct: 52  VTCTITDLHINFIMQPVPMLPVWACRFEGVGLKFLGIW 89


>AF016684-4|AAB66208.1|  159|Caenorhabditis elegans Hypothetical
           protein F45C12.9 protein.
          Length = 159

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 301 CTLSCTWKVE*FHVCGIFGRTSPWYHDDNPWSLSYFSLQKYQWYAI 164
           C L+  +    F+  GI      WY    P+ +SYF++    WY +
Sbjct: 61  CILNYYYLCNLFNFYGIVCEDGQWYATKYPYGISYFAI-TVTWYTM 105


>AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical
           protein F56A11.6 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 372 R*DRACLQCDRTRSRRDREQARPRQDPTETHQHPHRAR 485
           R DR+  + DR +SR DRE+ R RQD ++T     R R
Sbjct: 400 RDDRSEERKDR-KSRDDRERPRSRQDKSKTRSVEDRPR 436


>Z68005-4|CAA91992.2|  430|Caenorhabditis elegans Hypothetical
           protein F59F3.2 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 381 CLTVVYFVWHTLLYSAIAPNVNDVSHFVHFHVRG 280
           C+++   +  T +Y  I   +N +SH ++ H +G
Sbjct: 21  CISIFLIIASTTMYIFIGLKINHISHRLYNHAKG 54


>U64598-3|AAK39213.1|  432|Caenorhabditis elegans Hypothetical
           protein C52B9.3a protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
 Frame = -2

Query: 540 PFVLLDALEEVLPALGVLHVLDADVDAFR*DPAADALVHDHAESV----CGHIVNTPCLT 373
           PF  L +   VLP +  LH+ D   + F  D   D  +     +V    CG +  +  + 
Sbjct: 132 PFKTLQSFLSVLPKVTELHMSD---NQFNDDDDCDEPISTTVRTVHLNRCGFLKWSSVMN 188

Query: 372 VVYFVWHTLLYSAIAPNVNDVSHFVHFHVRGKWNSSMCAESS 247
           VV    +          + DV+H  HF     WN    A++S
Sbjct: 189 VVKRFPNVCSVFVCENPLKDVTHCKHFEQLPFWNFLNLAKTS 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,786
Number of Sequences: 27780
Number of extensions: 326161
Number of successful extensions: 1130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)