Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_I03
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0140 + 12255418-12255512,12257514-12257793 134 3e-32
08_02_1181 - 24985963-24986242,24987109-24987197 132 9e-32
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 111 2e-25
02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226 32 0.18
07_01_0222 - 1638965-1640965 30 0.93
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 29 2.2
04_04_1021 + 30190403-30190450,30191245-30192924 28 3.8
04_04_1022 + 30195703-30195753,30195925-30195987,30197535-301978... 27 6.6
>06_02_0140 + 12255418-12255512,12257514-12257793
Length = 124
Score = 134 bits (324), Expect = 3e-32
Identities = 65/118 (55%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Frame = +1
Query: 40 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTR 219
K +R G + +EVVTREYT+NLHKRLHG FKK+AP AIKEIR+FA+K MGT DVRVD +
Sbjct: 4 KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63
Query: 220 LNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 387
LNK++WS G+R+VP ND+ED+ +L++LVT VP +KGL T+ V+
Sbjct: 64 LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 132 bits (320), Expect = 9e-32
Identities = 66/117 (56%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
Frame = +1
Query: 46 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRL 222
E+KG +A E VVTREYT+NLHKRLH FKK+AP AIKEIR+FA+K MGT DVRVD +L
Sbjct: 3 EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62
Query: 223 NKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 387
NK++WS G+R+VP ND+ED+ +L++LVT VP +KGL T+ VD
Sbjct: 63 NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 111 bits (267), Expect = 2e-25
Identities = 58/124 (46%), Positives = 79/124 (63%), Gaps = 18/124 (14%)
Frame = +1
Query: 70 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRRFAEKQMGTPD 201
+EVVTREYT+NLHKRLHG FKK+AP AIKEIR+FA+K MGT D
Sbjct: 13 DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72
Query: 202 VRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQT 375
+R+D +LNK +W+ G+R+VP ND+ED+ +L++LVT +P +KGL T
Sbjct: 73 IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGT 132
Query: 376 ENVD 387
+ V+
Sbjct: 133 KVVE 136
>02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226
Length = 568
Score = 32.3 bits (70), Expect = 0.18
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -1
Query: 294 ASAR*SYTNTEWNIPDSF*PKIFV*AGIYSYVWSTHLFFSESPDLLDSTGCTLLETNTV 118
A+A N W +P F A ++ Y+ FF E+PD + ST CT L T+
Sbjct: 446 AAASGEAINIAWQMPQYF---FLAGAEVFCYIAQLEFFFGEAPDTMKST-CTSLALLTI 500
>07_01_0222 - 1638965-1640965
Length = 666
Score = 29.9 bits (64), Expect = 0.93
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 358 WRQRAHMLQG*TVCVLSLHHHCVCEIVLH 272
W +R H+++G C+L LH C +V+H
Sbjct: 442 WNKRFHIIKGVASCLLYLHEECE-SVVIH 469
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 358 WRQRAHMLQG*TVCVLSLHHHCVCEIVLHEHGMEHS*LLLTKDI 227
W++R H+++G +L LH H I+ ++ S +LL KD+
Sbjct: 471 WKKRLHIIEGVVQGLLYLHKHSRVRII--HRDLKASNILLDKDL 512
>04_04_1021 + 30190403-30190450,30191245-30192924
Length = 575
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -1
Query: 294 ASAR*SYTNTEWNIPDSF*PKIFV*AGIYSYVWSTHLFFSESPDLLDSTGCTLLETNTV 118
A+AR + W +P F + ++ Y+ F+SE+P+ + S CT L TV
Sbjct: 453 AAARGESLSIAWQMPQYF---MLAGGEVFCYIAQLEFFYSEAPESMKSI-CTSLALLTV 507
>04_04_1022 +
30195703-30195753,30195925-30195987,30197535-30197843,
30197934-30199292
Length = 593
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 294 ASAR*SYTNTEWNIPDSF*PKIFV*AGIYSYVWSTHLFFSESPDLLDSTGCTLLETNTV 118
A+ R + W +P F A ++ Y+ F+SE+P+ + S CT L TV
Sbjct: 471 AAGRGESLSIAWQMPQYF---ALAGAEVFCYIAQLEFFYSEAPESMKSM-CTSLALLTV 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,627
Number of Sequences: 37544
Number of extensions: 224078
Number of successful extensions: 563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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